Variant report

Variant	rs11773706
Chromosome Location	chr7:22268644-22268645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10499541	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761102	0.90[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766435	1.00[ASN][1000 genomes]
rs11766861	0.89[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531808	1.00[CEU][hapmap]
rs12534735	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700363	0.89[CEU][hapmap];0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700364	0.89[CEU][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13222400	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13230638	1.00[ASN][1000 genomes]
rs13237958	1.00[ASN][1000 genomes]
rs1419764	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419765	0.89[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17711941	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773555	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34167821	1.00[ASN][1000 genomes]
rs34401570	1.00[ASN][1000 genomes]
rs35430878	1.00[ASN][1000 genomes]
rs56073345	1.00[ASN][1000 genomes]
rs71526391	0.90[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526392	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526393	1.00[ASN][1000 genomes]
rs73683342	1.00[ASN][1000 genomes]
rs73683348	1.00[ASN][1000 genomes]
rs73683355	1.00[ASN][1000 genomes]
rs7803094	0.89[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
2	chr7:22254000-22274000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:22254600-22274000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:22259000-22270600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:22259000-22276400	Weak transcription	Esophagus	oesophagus
6	chr7:22259800-22281600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr7:22260000-22269400	Weak transcription	Brain Anterior Caudate	brain
8	chr7:22260000-22269400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:22260800-22278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:22260800-22281400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:22262200-22329000	Weak transcription	Primary B cells from cord blood	blood
12	chr7:22262400-22269400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:22262400-22279200	Weak transcription	GM12878-XiMat	blood
14	chr7:22263000-22274000	Weak transcription	Liver	Liver
15	chr7:22263000-22276200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr7:22263400-22281600	Weak transcription	Fetal Intestine Large	intestine
17	chr7:22263600-22270000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:22264400-22269000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:22264400-22277200	Weak transcription	Pancreas	Pancrea
20	chr7:22264400-22291000	Weak transcription	Lung	lung
21	chr7:22264600-22270800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:22264800-22276200	Weak transcription	Fetal Intestine Small	intestine
23	chr7:22265400-22271000	Strong transcription	Dnd41	blood
24	chr7:22266200-22268800	Enhancers	Brain Substantia Nigra	brain
25	chr7:22267200-22269800	Enhancers	Brain Cingulate Gyrus	brain
26	chr7:22267600-22269400	Enhancers	Brain Angular Gyrus	brain
27	chr7:22267600-22275800	Strong transcription	HepG2	liver
28	chr7:22267800-22269400	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr7:22267800-22280600	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:22268000-22268800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:22268400-22270200	Strong transcription	Fetal Thymus	thymus
32	chr7:22268600-22268800	Enhancers	Right Ventricle	heart
33	chr7:22268600-22269000	Enhancers	Placenta	Placenta
34	chr7:22268600-22269400	Enhancers	Placenta Amnion	Placenta Amnion
35	chr7:22268600-22269800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:22268600-22270000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr7:22268600-22270400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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