Variant report

Variant	rs10499541
Chromosome Location	chr7:22272733-22272734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11761102	0.90[CEU][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766435	1.00[ASN][1000 genomes]
rs11766861	1.00[ASW][hapmap];0.89[CEU][hapmap];0.81[LWK][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773706	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531808	1.00[CEU][hapmap]
rs12534735	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700363	1.00[ASW][hapmap];0.89[CEU][hapmap];0.87[LWK][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700364	1.00[ASW][hapmap];0.89[CEU][hapmap];0.94[LWK][hapmap];0.83[TSI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13222400	1.00[CEU][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13230638	1.00[ASN][1000 genomes]
rs13237958	1.00[ASN][1000 genomes]
rs1419764	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419765	0.89[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17711941	1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773555	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34167821	1.00[ASN][1000 genomes]
rs34401570	1.00[ASN][1000 genomes]
rs35430878	1.00[ASN][1000 genomes]
rs56073345	1.00[ASN][1000 genomes]
rs71526391	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526392	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526393	1.00[ASN][1000 genomes]
rs73683342	1.00[ASN][1000 genomes]
rs73683348	1.00[ASN][1000 genomes]
rs73683355	1.00[ASN][1000 genomes]
rs7803094	0.89[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10499541	IL6	cis	parietal	SCAN
rs10499541	FERD3L	cis	cerebellum	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
2	chr7:22254000-22274000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:22254600-22274000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:22259000-22276400	Weak transcription	Esophagus	oesophagus
5	chr7:22259800-22281600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:22260800-22278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:22260800-22281400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:22262200-22329000	Weak transcription	Primary B cells from cord blood	blood
9	chr7:22262400-22279200	Weak transcription	GM12878-XiMat	blood
10	chr7:22263000-22274000	Weak transcription	Liver	Liver
11	chr7:22263000-22276200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:22263400-22281600	Weak transcription	Fetal Intestine Large	intestine
13	chr7:22264400-22277200	Weak transcription	Pancreas	Pancrea
14	chr7:22264400-22291000	Weak transcription	Lung	lung
15	chr7:22264800-22276200	Weak transcription	Fetal Intestine Small	intestine
16	chr7:22267600-22275800	Strong transcription	HepG2	liver
17	chr7:22267800-22280600	Weak transcription	Brain Hippocampus Middle	brain
18	chr7:22268800-22276800	Weak transcription	Right Ventricle	heart
19	chr7:22269400-22281800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr7:22270000-22273600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:22270200-22273600	Weak transcription	Osteobl	bone
22	chr7:22270200-22277200	Weak transcription	Fetal Thymus	thymus
23	chr7:22270200-22283800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr7:22271000-22275600	Weak transcription	Dnd41	blood
25	chr7:22271200-22273600	Weak transcription	Brain Substantia Nigra	brain
26	chr7:22271400-22273200	Weak transcription	Brain Angular Gyrus	brain
27	chr7:22271400-22274000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:22271800-22273600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:22271800-22289400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:22271800-22290000	Weak transcription	Brain Anterior Caudate	brain
31	chr7:22272000-22290000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:22272400-22272800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:22272400-22273000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links