Variant report

Variant	rs11766861
Chromosome Location	chr7:22278040-22278041
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22274204..22275923-chr7:22277210..22279208,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10282106	0.88[CEU][hapmap]
rs10282222	0.89[CEU][hapmap]
rs10499541	1.00[ASW][hapmap];0.89[CEU][hapmap];0.81[LWK][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10950895	1.00[YRI][hapmap]
rs11761102	0.80[CEU][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763898	0.89[CEU][hapmap]
rs11766435	1.00[ASN][1000 genomes]
rs11773706	0.89[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530484	0.88[CEU][hapmap]
rs12531808	0.89[CEU][hapmap]
rs12534735	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700363	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700364	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13222400	0.89[CEU][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13230638	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13237958	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419764	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419765	1.00[CEU][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17711941	0.89[CEU][hapmap];0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773555	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17774699	1.00[MEX][hapmap]
rs2079478	0.85[CEU][hapmap]
rs34167821	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34401570	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35430878	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35979304	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4722108	0.89[CEU][hapmap]
rs4722110	0.89[CEU][hapmap]
rs56073345	1.00[ASN][1000 genomes]
rs71526391	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526392	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526393	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73683342	1.00[ASN][1000 genomes]
rs73683348	1.00[ASN][1000 genomes]
rs73683355	1.00[ASN][1000 genomes]
rs7803094	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810806	0.89[CEU][hapmap]
rs9886139	0.89[CEU][hapmap]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
2	chr7:22259800-22281600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:22260800-22278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:22260800-22281400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:22262200-22329000	Weak transcription	Primary B cells from cord blood	blood
6	chr7:22262400-22279200	Weak transcription	GM12878-XiMat	blood
7	chr7:22263400-22281600	Weak transcription	Fetal Intestine Large	intestine
8	chr7:22264400-22291000	Weak transcription	Lung	lung
9	chr7:22267800-22280600	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:22269400-22281800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr7:22270200-22283800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:22271800-22289400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr7:22271800-22290000	Weak transcription	Brain Anterior Caudate	brain
14	chr7:22272000-22290000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:22274200-22285800	Weak transcription	Gastric	stomach
16	chr7:22274200-22289400	Weak transcription	Brain Angular Gyrus	brain
17	chr7:22274400-22282600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr7:22274400-22288000	Weak transcription	Brain Substantia Nigra	brain
19	chr7:22274400-22291000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:22275000-22290800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:22275600-22286000	Strong transcription	Dnd41	blood
22	chr7:22276000-22278200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:22276200-22285800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:22276600-22278600	Weak transcription	Spleen	Spleen
25	chr7:22276600-22295600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr7:22276800-22281600	Weak transcription	Esophagus	oesophagus
27	chr7:22277200-22278200	Weak transcription	HepG2	liver
28	chr7:22277400-22278400	Weak transcription	Fetal Intestine Small	intestine
29	chr7:22277400-22280400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr7:22277800-22279200	Enhancers	Pancreas	Pancrea
31	chr7:22277800-22280400	Weak transcription	Fetal Thymus	thymus
32	chr7:22278000-22278400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:22278000-22278600	Enhancers	Liver	Liver
34	chr7:22278000-22278800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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