Variant report

Variant	rs11763898
Chromosome Location	chr7:22242561-22242562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22240872..22243800-chr7:22248891..22250642,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10250341	1.00[CHB][hapmap]
rs10250355	1.00[CHB][hapmap]
rs10255486	1.00[CHB][hapmap]
rs10282106	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10282222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10950895	1.00[CHB][hapmap]
rs11766435	0.89[CEU][hapmap]
rs11766861	0.89[CEU][hapmap]
rs12530484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12533150	1.00[CHB][hapmap]
rs12700363	0.89[CEU][hapmap]
rs12700364	0.89[CEU][hapmap]
rs1345251	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419765	0.89[CEU][hapmap]
rs17773555	0.87[CEU][hapmap]
rs2079478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4291165	1.00[CHB][hapmap]
rs4496855	1.00[CHB][hapmap]
rs4590334	1.00[CHB][hapmap]
rs4640962	1.00[CHB][hapmap]
rs4722108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4722110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5014150	1.00[CHB][hapmap]
rs6461640	1.00[CHB][hapmap]
rs6461641	1.00[CHB][hapmap]
rs6944433	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6948973	1.00[CHB][hapmap]
rs6949461	1.00[CHB][hapmap]
rs6960229	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6965394	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6971344	1.00[CHB][hapmap]
rs6980127	1.00[CHB][hapmap]
rs73683318	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7796738	1.00[CHB][hapmap]
rs7803094	0.89[CEU][hapmap]
rs7809342	1.00[CHB][hapmap]
rs7810806	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
2	chr7:22223200-22242600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:22225400-22253600	Weak transcription	Stomach Mucosa	stomach
4	chr7:22225800-22246800	Strong transcription	Dnd41	blood
5	chr7:22227400-22245600	Strong transcription	HepG2	liver
6	chr7:22230400-22243000	Weak transcription	Gastric	stomach
7	chr7:22233400-22247600	Weak transcription	Psoas Muscle	Psoas
8	chr7:22233400-22259200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:22233600-22242800	Weak transcription	Thymus	Thymus
10	chr7:22233600-22247600	Weak transcription	Right Ventricle	heart
11	chr7:22233600-22253600	Weak transcription	Esophagus	oesophagus
12	chr7:22233600-22257000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:22233800-22242600	Weak transcription	Liver	Liver
14	chr7:22233800-22244000	Weak transcription	NHEK	skin
15	chr7:22233800-22247400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:22233800-22247400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:22235600-22253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:22235600-22260600	Weak transcription	GM12878-XiMat	blood
19	chr7:22236400-22249200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:22238000-22243600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr7:22238000-22264600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr7:22238800-22253600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:22239600-22251000	Weak transcription	Adipose Nuclei	Adipose
24	chr7:22240400-22243400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:22240600-22243600	Enhancers	Spleen	Spleen
26	chr7:22240800-22243600	Genic enhancers	Lung	lung
27	chr7:22240800-22244600	Strong transcription	Primary B cells from cord blood	blood
28	chr7:22241000-22242800	Weak transcription	Fetal Intestine Large	intestine
29	chr7:22241000-22243200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr7:22241000-22245200	Weak transcription	Colonic Mucosa	Colon
31	chr7:22241000-22247000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:22241000-22267800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr7:22241200-22244000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr7:22241400-22243600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:22241400-22244000	Weak transcription	Placenta	Placenta
36	chr7:22241600-22244200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr7:22241800-22243000	Weak transcription	Aorta	Aorta
38	chr7:22241800-22244400	Weak transcription	Brain Angular Gyrus	brain
39	chr7:22242000-22242800	Weak transcription	Pancreas	Pancrea
40	chr7:22242000-22242800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr7:22242000-22243000	Weak transcription	Left Ventricle	heart
42	chr7:22242000-22243000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr7:22242000-22243400	Weak transcription	HSMMtube	muscle
44	chr7:22242000-22244000	Strong transcription	Fetal Thymus	thymus
45	chr7:22242000-22244400	Weak transcription	Brain Substantia Nigra	brain
46	chr7:22242000-22247600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr7:22242200-22242600	Weak transcription	Right Atrium	heart
48	chr7:22242200-22242800	Weak transcription	Fetal Intestine Small	intestine
49	chr7:22242200-22243200	Strong transcription	Brain Anterior Caudate	brain
50	chr7:22242200-22243200	Weak transcription	Brain Cingulate Gyrus	brain

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