Variant report

Variant	rs4640962
Chromosome Location	chr7:22191607-22191608
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22189471..22192377-chr7:22213016..22216005,2	MCF-7	breast:
2	chr7:22185300..22188269-chr7:22188611..22192346,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10228358	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10242092	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268307	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268516	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271658	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282222	1.00[CHB][hapmap]
rs10950895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763898	1.00[CHB][hapmap]
rs12530484	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs12533150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223956	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981598	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2079478	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs28411164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28435496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28450495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28587984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28656168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28716840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273945	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273948	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273951	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41273957	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273963	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4291165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4496855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4590334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4719686	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722102	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722104	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722105	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722106	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722108	1.00[CHB][hapmap]
rs4722110	1.00[CHB][hapmap]
rs5014150	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944433	0.87[AFR][1000 genomes]
rs6948973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949461	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960216	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965394	1.00[CHB][hapmap]
rs6971344	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796738	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808688	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886139	1.00[CHB][hapmap]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22153000-22193000	Strong transcription	Dnd41	blood
2	chr7:22159800-22214000	Weak transcription	Small Intestine	intestine
3	chr7:22162200-22198000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:22168000-22195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:22168000-22195800	Weak transcription	NHEK	skin
6	chr7:22175200-22193600	Weak transcription	HUVEC	blood vessel
7	chr7:22176200-22198200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr7:22176400-22203200	Weak transcription	Stomach Mucosa	stomach
9	chr7:22177800-22195800	Weak transcription	HMEC	breast
10	chr7:22179600-22206600	Weak transcription	Fetal Stomach	stomach
11	chr7:22181400-22192800	Weak transcription	Right Ventricle	heart
12	chr7:22181400-22193600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:22181400-22199000	Weak transcription	Gastric	stomach
14	chr7:22181800-22193200	Weak transcription	Placenta	Placenta
15	chr7:22183600-22192400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:22183600-22192800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:22183600-22193000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:22184400-22193400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:22184400-22195800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
21	chr7:22184800-22192600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:22185000-22192600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:22185400-22192400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:22186600-22193000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr7:22186800-22191800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr7:22187000-22204800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr7:22187200-22192600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:22187200-22193600	Weak transcription	Adipose Nuclei	Adipose
29	chr7:22187200-22199000	Weak transcription	Fetal Brain Male	brain
30	chr7:22187400-22192600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:22187400-22192600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:22187600-22193000	Weak transcription	Brain Germinal Matrix	brain
33	chr7:22187800-22195600	Weak transcription	NHDF-Ad	bronchial
34	chr7:22187800-22196200	Weak transcription	Fetal Kidney	kidney
35	chr7:22188000-22195600	Weak transcription	GM12878-XiMat	blood
36	chr7:22189200-22192600	Enhancers	Brain Substantia Nigra	brain
37	chr7:22189200-22193200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:22189400-22192600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr7:22189400-22193000	Weak transcription	Primary B cells from cord blood	blood
40	chr7:22189400-22196000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr7:22189400-22196000	Weak transcription	Left Ventricle	heart
42	chr7:22189400-22197200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr7:22189600-22192600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr7:22189800-22192600	Weak transcription	Brain Anterior Caudate	brain
45	chr7:22190000-22192600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr7:22190000-22192600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr7:22190000-22192600	Weak transcription	Lung	lung
48	chr7:22190000-22192600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr7:22190000-22192800	Weak transcription	Brain Angular Gyrus	brain
50	chr7:22190000-22195400	Weak transcription	Duodenum Mucosa	Duodenum

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