Variant report

Variant	rs4722106
Chromosome Location	chr7:22219137-22219138
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10228358	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10242092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250341	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250355	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10268516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10271658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10950895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530484	0.93[AFR][1000 genomes]
rs12533150	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13223956	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981598	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2079478	0.82[AFR][1000 genomes]
rs28411164	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28435496	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28450495	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28587984	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28656168	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28716840	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs41273957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41273963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4291165	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4496855	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4590334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4640962	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4719686	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722102	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722104	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722105	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5014150	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6461641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944433	0.93[AFR][1000 genomes]
rs6948973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960216	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980127	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7796738	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808688	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606405	chr7:22202485-22235825	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
2	chr7:22190000-22232800	Weak transcription	Aorta	Aorta
3	chr7:22193800-22232000	Weak transcription	Adipose Nuclei	Adipose
4	chr7:22194200-22223200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:22194400-22219400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:22194400-22227200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:22194400-22232400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:22194600-22221200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:22198000-22223600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:22199800-22219600	Weak transcription	Left Ventricle	heart
11	chr7:22207000-22232000	Weak transcription	Fetal Stomach	stomach
12	chr7:22209000-22220000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:22212600-22220400	Strong transcription	HepG2	liver
14	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
15	chr7:22214600-22232000	Weak transcription	Small Intestine	intestine
16	chr7:22214600-22232400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:22214800-22232600	Weak transcription	NHEK	skin
18	chr7:22215000-22221400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:22215000-22226600	Weak transcription	Esophagus	oesophagus
20	chr7:22215400-22232000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:22215600-22223600	Strong transcription	Fetal Thymus	thymus
22	chr7:22217000-22221400	Weak transcription	Fetal Brain Male	brain
23	chr7:22217400-22220200	Weak transcription	Brain Anterior Caudate	brain
24	chr7:22217400-22229000	Weak transcription	Pancreas	Pancrea
25	chr7:22218200-22220000	Weak transcription	Liver	Liver
26	chr7:22218400-22219600	Weak transcription	Primary B cells from cord blood	blood
27	chr7:22218400-22220000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr7:22218400-22220400	Weak transcription	Brain Hippocampus Middle	brain
29	chr7:22218400-22226600	Weak transcription	Fetal Intestine Large	intestine
30	chr7:22218400-22227000	Weak transcription	Spleen	Spleen
31	chr7:22218600-22219200	Weak transcription	Brain Substantia Nigra	brain
32	chr7:22218600-22219400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr7:22218600-22219800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr7:22218600-22220400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:22218600-22223000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr7:22218600-22227000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr7:22218600-22227200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr7:22218600-22227200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:22218600-22227200	Weak transcription	Lung	lung
40	chr7:22218600-22229000	Weak transcription	Fetal Intestine Small	intestine
41	chr7:22218800-22232000	Weak transcription	Thymus	Thymus
42	chr7:22219000-22219400	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr7:22219000-22219800	Enhancers	Brain Angular Gyrus	brain
44	chr7:22219000-22220800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:22219000-22221600	Genic enhancers	Dnd41	blood

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