Variant report

Variant	rs10282106
Chromosome Location	chr7:22217736-22217737
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10282222	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763898	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11766435	0.88[CEU][hapmap]
rs11766861	0.88[CEU][hapmap]
rs12530484	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700363	0.88[CEU][hapmap]
rs12700364	0.88[CEU][hapmap]
rs1345251	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1419765	0.88[CEU][hapmap]
rs17773555	0.87[CEU][hapmap]
rs2079478	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722108	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722110	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6944433	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6960229	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965394	0.88[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73683318	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803094	0.88[CEU][hapmap]
rs7810806	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9886139	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606405	chr7:22202485-22235825	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
2	chr7:22190000-22232800	Weak transcription	Aorta	Aorta
3	chr7:22193800-22232000	Weak transcription	Adipose Nuclei	Adipose
4	chr7:22194200-22223200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:22194400-22218200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:22194400-22219400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:22194400-22227200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:22194400-22232400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:22194600-22221200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:22196800-22218000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:22198000-22223600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:22199800-22219600	Weak transcription	Left Ventricle	heart
13	chr7:22206800-22218200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:22207000-22232000	Weak transcription	Fetal Stomach	stomach
15	chr7:22209000-22220000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:22212600-22220400	Strong transcription	HepG2	liver
17	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
18	chr7:22214600-22232000	Weak transcription	Small Intestine	intestine
19	chr7:22214600-22232400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:22214800-22232600	Weak transcription	NHEK	skin
21	chr7:22215000-22221400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:22215000-22226600	Weak transcription	Esophagus	oesophagus
23	chr7:22215400-22232000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr7:22215600-22218200	Genic enhancers	Dnd41	blood
25	chr7:22215600-22218600	Strong transcription	Lung	lung
26	chr7:22215600-22223600	Strong transcription	Fetal Thymus	thymus
27	chr7:22216200-22218600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:22216600-22218200	Strong transcription	Liver	Liver
29	chr7:22216600-22218400	Genic enhancers	Brain Angular Gyrus	brain
30	chr7:22216600-22218600	Genic enhancers	Brain Substantia Nigra	brain
31	chr7:22216800-22218400	Strong transcription	Primary B cells from cord blood	blood
32	chr7:22216800-22218400	Strong transcription	Spleen	Spleen
33	chr7:22216800-22218600	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr7:22217000-22217800	Genic enhancers	Brain Hippocampus Middle	brain
35	chr7:22217000-22218400	Strong transcription	Fetal Intestine Large	intestine
36	chr7:22217000-22221400	Weak transcription	Fetal Brain Male	brain
37	chr7:22217200-22218200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr7:22217400-22217800	Weak transcription	Thymus	Thymus
39	chr7:22217400-22218600	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr7:22217400-22219000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:22217400-22220200	Weak transcription	Brain Anterior Caudate	brain
42	chr7:22217400-22229000	Weak transcription	Pancreas	Pancrea
43	chr7:22217600-22218600	Strong transcription	Fetal Intestine Small	intestine

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