Variant report

Variant	rs13222400
Chromosome Location	chr7:22281492-22281493
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22279687..22281949-chr7:22287728..22289800,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10499541	1.00[CEU][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761102	0.90[CEU][hapmap];1.00[GIH][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766435	1.00[ASN][1000 genomes]
rs11766861	0.89[CEU][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773706	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531808	1.00[CEU][hapmap]
rs12534735	1.00[ASN][1000 genomes]
rs12700363	0.89[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12700364	0.89[CEU][hapmap];0.88[TSI][hapmap];1.00[ASN][1000 genomes]
rs13230638	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13237958	1.00[ASN][1000 genomes]
rs1419764	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419765	0.93[ASW][hapmap];0.89[CEU][hapmap];0.89[LWK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17711941	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773555	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs34167821	1.00[ASN][1000 genomes]
rs34401570	1.00[ASN][1000 genomes]
rs35430878	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073345	1.00[ASN][1000 genomes]
rs71526391	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526392	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71526393	1.00[ASN][1000 genomes]
rs73683342	1.00[ASN][1000 genomes]
rs73683348	1.00[ASN][1000 genomes]
rs73683355	1.00[ASN][1000 genomes]
rs7803094	0.89[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13222400	FERD3L	cis	cerebellum	SCAN
rs13222400	RAPGEF5	cis	brain	BrainEAC
rs13222400	IL6	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22243400-22307200	Weak transcription	Thymus	Thymus
2	chr7:22259800-22281600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:22262200-22329000	Weak transcription	Primary B cells from cord blood	blood
4	chr7:22263400-22281600	Weak transcription	Fetal Intestine Large	intestine
5	chr7:22264400-22291000	Weak transcription	Lung	lung
6	chr7:22269400-22281800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:22270200-22283800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:22271800-22289400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:22271800-22290000	Weak transcription	Brain Anterior Caudate	brain
10	chr7:22272000-22290000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:22274200-22285800	Weak transcription	Gastric	stomach
12	chr7:22274200-22289400	Weak transcription	Brain Angular Gyrus	brain
13	chr7:22274400-22282600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:22274400-22288000	Weak transcription	Brain Substantia Nigra	brain
15	chr7:22274400-22291000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:22275000-22290800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr7:22275600-22286000	Strong transcription	Dnd41	blood
18	chr7:22276200-22285800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:22276600-22295600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:22276800-22281600	Weak transcription	Esophagus	oesophagus
21	chr7:22278600-22325800	Weak transcription	Liver	Liver
22	chr7:22278800-22310800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:22279000-22281600	Weak transcription	Spleen	Spleen
24	chr7:22279000-22297000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr7:22279200-22281600	Weak transcription	Fetal Intestine Small	intestine
26	chr7:22279200-22281600	Weak transcription	Pancreas	Pancrea
27	chr7:22279200-22283600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:22280400-22281600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:22280400-22281800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr7:22280400-22282200	Strong transcription	Fetal Thymus	thymus
31	chr7:22281000-22282200	Genic enhancers	HepG2	liver
32	chr7:22281400-22282000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr7:22281400-22282200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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