Variant report

Variant	rs17146637
Chromosome Location	chr7:22347351-22347352
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22341670..22344140-chr7:22346502..22348156,2	K562	blood:
2	chr7:22345864..22347531-chr7:22352832..22355728,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17146613	0.82[CEU][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17146725	0.84[JPT][hapmap]
rs2302000	1.00[YRI][hapmap]
rs59098991	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73683350	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830923	chr7:22316841-22494973	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22282200-22364400	Weak transcription	Esophagus	oesophagus
2	chr7:22326800-22357000	Strong transcription	HepG2	liver
3	chr7:22327600-22359600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:22327800-22350400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:22331400-22359600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:22333400-22349600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:22333400-22361800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:22336600-22347600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:22337000-22357800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:22337000-22362600	Weak transcription	Brain Anterior Caudate	brain
11	chr7:22340600-22369800	Weak transcription	Gastric	stomach
12	chr7:22340800-22352400	Weak transcription	Stomach Mucosa	stomach
13	chr7:22340800-22365000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:22342200-22359600	Weak transcription	Pancreas	Pancrea
15	chr7:22342200-22373200	Weak transcription	Lung	lung
16	chr7:22342800-22359800	Weak transcription	Fetal Intestine Small	intestine
17	chr7:22343200-22348200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:22343200-22349800	Strong transcription	Rectal Mucosa Donor 31	rectum
19	chr7:22344200-22348600	Strong transcription	Liver	Liver
20	chr7:22344200-22348800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:22344200-22357600	Strong transcription	Fetal Thymus	thymus
22	chr7:22344400-22349600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:22344600-22358000	Strong transcription	Dnd41	blood
24	chr7:22345000-22348000	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr7:22345200-22348200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:22345200-22348400	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr7:22345200-22348400	Strong transcription	Primary B cells from cord blood	blood
28	chr7:22345200-22350600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr7:22345400-22347400	Strong transcription	Thymus	Thymus
30	chr7:22345400-22348000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:22345400-22348200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:22345400-22348200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr7:22345400-22349200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr7:22345400-22349400	Weak transcription	Fetal Kidney	kidney
35	chr7:22345400-22349600	Weak transcription	Primary B cells from peripheral blood	blood
36	chr7:22346000-22348400	Strong transcription	Duodenum Mucosa	Duodenum
37	chr7:22346200-22348000	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr7:22346600-22348200	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr7:22346600-22359000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:22346600-22359600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr7:22346600-22359800	Weak transcription	Brain Angular Gyrus	brain
42	chr7:22346800-22348000	Strong transcription	NHEK	skin
43	chr7:22346800-22355400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr7:22347000-22347400	Strong transcription	Colonic Mucosa	Colon
45	chr7:22347000-22348000	Strong transcription	GM12878-XiMat	blood
46	chr7:22347000-22349200	Strong transcription	Fetal Intestine Large	intestine
47	chr7:22347200-22356200	Weak transcription	Left Ventricle	heart
48	chr7:22347200-22359600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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