Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10062669	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10078298	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17146687	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17146688	1.00[CEU][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17146690	1.00[CEU][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17146714	1.00[CEU][hapmap];0.86[YRI][hapmap];0.93[EUR][1000 genomes]
rs17146715	1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17146717	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2405952	1.00[CEU][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2604162	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2691095	1.00[CEU][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes]
rs2691096	1.00[CEU][hapmap];0.81[YRI][hapmap];0.87[EUR][1000 genomes]
rs28702378	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56008932	0.93[EUR][1000 genomes]
rs56053702	0.93[EUR][1000 genomes]
rs60492181	0.93[EUR][1000 genomes]
rs60693875	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6881030	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs6887667	0.87[EUR][1000 genomes]
rs6893168	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs73783454	0.93[EUR][1000 genomes]
rs73783455	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv462427	chr5:119838923-119928674	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv599601	chr5:119838923-119928674	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119818200-119845600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:119834400-119843600	Weak transcription	HSMMtube	muscle
3	chr5:119836400-119852400	Weak transcription	HSMM	muscle
4	chr5:119838800-119843600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:119839800-119879800	Weak transcription	Psoas Muscle	Psoas
6	chr5:119842400-119844000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:119842400-119844000	Enhancers	Osteobl	bone
8	chr5:119842600-119843800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:119842600-119852400	Weak transcription	Aorta	Aorta
10	chr5:119842800-119843600	Weak transcription	K562	blood
11	chr5:119842800-119844200	Enhancers	Fetal Lung	lung
12	chr5:119843000-119843200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:119843000-119844000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:119843000-119844000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:119843000-119844200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr5:119843000-119844400	Flanking Active TSS	NHDF-Ad	bronchial

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