Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10062669	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10078298	0.93[EUR][1000 genomes]
rs17146687	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17146688	1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs17146690	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs17146693	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17146714	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs17146715	1.00[CEU][hapmap];0.81[YRI][hapmap];0.93[EUR][1000 genomes]
rs17146717	1.00[CEU][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes]
rs2405952	1.00[CEU][hapmap];0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs2691095	1.00[CEU][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2691096	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28702378	1.00[EUR][1000 genomes]
rs56008932	1.00[EUR][1000 genomes]
rs56053702	1.00[EUR][1000 genomes]
rs60492181	1.00[EUR][1000 genomes]
rs60693875	0.93[EUR][1000 genomes]
rs6881030	1.00[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6887667	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6893168	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73783454	1.00[EUR][1000 genomes]
rs73783455	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119808600-119835800	Weak transcription	HSMM	muscle
2	chr5:119809800-119816800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:119812000-119826800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:119812200-119814800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:119812200-119840000	Weak transcription	Fetal Lung	lung
6	chr5:119813200-119815200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:119813600-119814800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:119814200-119816200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:119814200-119816400	Enhancers	Osteobl	bone
10	chr5:119814200-119816600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:119814200-119816800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:119814200-119817000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:119814400-119814600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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