Variant report

Variant	rs17147070
Chromosome Location	chr11:83950770-83950771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17146848	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17146860	1.00[AMR][1000 genomes]
rs17146952	1.00[AMR][1000 genomes]
rs17147298	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv415	chr11:83924941-83969603	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83945400-83961200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:83945800-83957400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83946000-83952000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr11:83946200-83952000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:83946200-83952800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83946200-83953000	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:83946400-83951800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:83946400-83952600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:83946600-83951800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:83946600-83952000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:83946600-83952400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:83947800-83951600	Weak transcription	Brain Substantia Nigra	brain
13	chr11:83949000-83952000	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links