Variant report

Variant	rs17146860
Chromosome Location	chr11:83834641-83834642
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17146848	1.00[AMR][1000 genomes]
rs17146952	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17147070	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2751034	chr11:83801970-83840272	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv555609	chr11:83822181-83842498	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
7	esv2760422	chr11:83828680-83845579	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv430414	chr11:83830452-83840252	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
9	nsv516717	chr11:83831259-83842498	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
10	nsv972931	chr11:83831335-83836670	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
11	nsv555610	chr11:83831922-83842498	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83831200-83839600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83833000-83835600	Enhancers	Brain Angular Gyrus	brain
3	chr11:83834000-83834800	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83834000-83835200	Enhancers	Brain Substantia Nigra	brain
5	chr11:83834200-83835400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:83834400-83834800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:83834400-83835800	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:83834600-83835000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:83834600-83839600	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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