Variant report
Variant | rs17147626 |
---|---|
Chromosome Location | chr11:84552250-84552251 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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(count:2 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs10466727 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs10466728 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes] |
rs10501579 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs10898316 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes] |
rs11234227 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
rs11234229 | 0.86[ASN][1000 genomes] |
rs11234233 | 0.86[ASN][1000 genomes] |
rs11600059 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs11601217 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs11603955 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs11605352 | 0.86[ASN][1000 genomes] |
rs12269779 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs12269784 | 0.86[ASN][1000 genomes] |
rs12273398 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs12273440 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs12275261 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes] |
rs12276815 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs12280451 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs12280968 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs12284441 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs12290560 | 0.86[ASN][1000 genomes] |
rs12290572 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs12290883 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs12295559 | 0.86[ASN][1000 genomes] |
rs12295785 | 0.86[ASN][1000 genomes] |
rs12295920 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs17147659 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs17147674 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs17147685 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs17147690 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs17147698 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs17147704 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs17147709 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs17147713 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs17147716 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs17147742 | 0.86[ASN][1000 genomes] |
rs17147743 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs17147746 | 1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs17147761 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs17147767 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs17147795 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs17159857 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs17808971 | 1.00[CHB][hapmap] |
rs1943718 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1943719 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1943720 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1943721 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2156515 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2156516 | 0.86[ASN][1000 genomes] |
rs2212970 | 0.86[JPT][hapmap] |
rs4453254 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs4491252 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs4497430 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs4550245 | 0.86[ASN][1000 genomes] |
rs4551791 | 0.86[ASN][1000 genomes] |
rs56994799 | 0.86[ASN][1000 genomes] |
rs57643378 | 0.85[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs57714409 | 0.86[ASN][1000 genomes] |
rs58613335 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs58755454 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs58823490 | 0.91[AFR][1000 genomes] |
rs7123032 | 0.80[ASN][1000 genomes] |
rs7940920 | 0.86[ASN][1000 genomes] |
rs7943571 | 0.80[ASN][1000 genomes] |
rs9971489 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv948410 | chr11:83918339-84812001 | Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
2 | nsv1045974 | chr11:84187214-84708462 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv1049964 | chr11:84315563-84578721 | Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
4 | nsv1048051 | chr11:84419442-84784233 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv541109 | chr11:84419442-84784233 | Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
6 | nsv898036 | chr11:84420132-84576644 | Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv817205 | chr11:84497319-84628963 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
8 | nsv555619 | chr11:84521977-84553807 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv898040 | chr11:84524697-84600597 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
10 | nsv555620 | chr11:84530538-84568024 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
11 | nsv555621 | chr11:84533831-84568024 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
12 | nsv468767 | chr11:84536635-84571784 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
13 | nsv555622 | chr11:84536635-84571784 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
14 | nsv8849 | chr11:84536933-84571495 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
15 | nsv516146 | chr11:84537908-84576644 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
16 | nsv555623 | chr11:84538675-84568024 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
17 | nsv555624 | chr11:84538675-84571784 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
18 | nsv1041517 | chr11:84541962-84570167 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
19 | nsv1037946 | chr11:84541962-84572435 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
20 | esv2760388 | chr11:84541974-84577299 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
21 | nsv1037058 | chr11:84546379-84570167 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
22 | nsv1049832 | chr11:84546379-84575375 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
23 | nsv555625 | chr11:84547441-84629013 | Flanking Active TSS Enhancers Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
24 | nsv555626 | chr11:84547595-84568024 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
25 | nsv555627 | chr11:84547595-84581522 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
26 | esv3332328 | chr11:84550404-84552702 | Inactive region | Chromatin interactive region | n/a | n/a | diseases |
No data |