Variant report

Variant	rs17148741
Chromosome Location	chr11:85765791-85765792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85760823..85766402-chr11:85776742..85780604,5	K562	blood:
2	chr11:85759414..85762040-chr11:85764190..85765879,2	K562	blood:
3	chr11:85764603..85768167-chr11:85770443..85773239,4	K562	blood:
4	chr11:85763399..85766390-chr11:85766683..85769520,2	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11234459	1.00[CEU][hapmap]
rs17148629	0.84[EUR][1000 genomes]
rs17148643	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17148690	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17148704	0.94[YRI][hapmap]
rs17148723	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17744717	1.00[CEU][hapmap]
rs61907296	0.84[EUR][1000 genomes]
rs7103626	1.00[CEU][hapmap]
rs7106389	0.84[EUR][1000 genomes]
rs7131265	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7931285	1.00[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv898054	chr11:85683554-85772636	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv468774	chr11:85688209-85775059	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv555644	chr11:85688209-85775059	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv1829985	chr11:85740319-85789350	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85752400-85768400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr11:85752800-85768200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr11:85752800-85776400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:85753200-85768000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr11:85754400-85768200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:85756000-85767000	Enhancers	Brain Hippocampus Middle	brain
7	chr11:85756000-85776000	Weak transcription	Esophagus	oesophagus
8	chr11:85756600-85775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:85758600-85774400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:85759000-85773600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:85759400-85766000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:85759400-85768200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr11:85759400-85773800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:85759400-85774400	Weak transcription	NHEK	skin
15	chr11:85759800-85772600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:85760200-85773000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:85760400-85772000	Weak transcription	Pancreas	Pancrea
18	chr11:85761000-85768800	Genic enhancers	K562	blood
19	chr11:85761400-85768000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr11:85762000-85766000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr11:85762000-85766000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:85762000-85766000	Enhancers	Left Ventricle	heart
23	chr11:85762000-85766000	ZNF genes & repeats	GM12878-XiMat	blood
24	chr11:85762200-85773800	Weak transcription	NHDF-Ad	bronchial
25	chr11:85762400-85766000	Enhancers	Psoas Muscle	Psoas
26	chr11:85762400-85773000	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr11:85762800-85766600	Enhancers	Primary B cells from peripheral blood	blood
28	chr11:85763000-85766600	Enhancers	Primary T cells from cord blood	blood
29	chr11:85763000-85766800	Enhancers	Adipose Nuclei	Adipose
30	chr11:85763000-85767000	Enhancers	Liver	Liver
31	chr11:85763000-85767600	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr11:85763200-85766000	Enhancers	Right Atrium	heart
33	chr11:85763200-85772800	Weak transcription	NHLF	lung
34	chr11:85763400-85766000	Enhancers	Primary B cells from cord blood	blood
35	chr11:85763400-85767400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:85763600-85766000	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr11:85763600-85766000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:85763600-85766800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:85763600-85767000	Enhancers	Brain Anterior Caudate	brain
40	chr11:85763600-85767000	Enhancers	Brain Cingulate Gyrus	brain
41	chr11:85763600-85767000	Enhancers	Colon Smooth Muscle	Colon
42	chr11:85763600-85767400	Enhancers	Primary T cells fromperipheralblood	blood
43	chr11:85763600-85767400	Enhancers	Brain Angular Gyrus	brain
44	chr11:85763600-85767600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:85763800-85765800	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr11:85763800-85765800	Enhancers	Rectal Smooth Muscle	rectum
47	chr11:85763800-85766000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:85763800-85766000	Enhancers	Brain Substantia Nigra	brain
49	chr11:85763800-85766000	Enhancers	Duodenum Mucosa	Duodenum
50	chr11:85763800-85766000	Enhancers	Fetal Thymus	thymus

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