Variant report

Variant	rs17744717
Chromosome Location	chr11:85600823-85600824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11234459	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12291135	0.92[EUR][1000 genomes]
rs17148643	1.00[CEU][hapmap]
rs17148690	1.00[CEU][hapmap]
rs17148723	1.00[CEU][hapmap]
rs17148741	1.00[CEU][hapmap]
rs34896037	0.80[EUR][1000 genomes]
rs7117361	1.00[AMR][1000 genomes]
rs7128481	1.00[CEU][hapmap]
rs7131265	1.00[CEU][hapmap]
rs7931285	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv832222	chr11:85405712-85603981	Enhancers Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv898051	chr11:85554057-85620823	Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	nsv898052	chr11:85579304-85620823	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv898053	chr11:85579304-85634425	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85595800-85601200	Weak transcription	HSMMtube	muscle
2	chr11:85596000-85601200	Weak transcription	NHLF	lung
3	chr11:85597800-85601000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:85597800-85601200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:85598000-85601000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:85600000-85601400	Enhancers	HepG2	liver
7	chr11:85600200-85603400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:85600400-85601400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:85600400-85601800	Enhancers	A549	lung
10	chr11:85600400-85602200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:85600400-85602200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:85600600-85601400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr11:85600600-85601600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:85600600-85601800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:85600600-85601800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr11:85600600-85601800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:85600600-85601800	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr11:85600600-85601800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:85600600-85601800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:85600600-85601800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:85600600-85601800	Enhancers	Placenta	Placenta
22	chr11:85600600-85601800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr11:85600600-85601800	Enhancers	Hela-S3	cervix
24	chr11:85600600-85601800	Enhancers	HMEC	breast
25	chr11:85600600-85601800	Enhancers	NHEK	skin
26	chr11:85600600-85601800	Enhancers	Osteobl	bone
27	chr11:85600600-85602000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:85600600-85602400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:85600800-85601000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr11:85600800-85601200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr11:85600800-85601800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr11:85600800-85601800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:85600800-85601800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:85600800-85601800	Enhancers	HSMM	muscle
35	chr11:85600800-85601800	Enhancers	NH-A	brain
36	chr11:85600800-85601800	Enhancers	NHDF-Ad	bronchial

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