Variant report

Variant	rs17149639
Chromosome Location	chr11:86690673-86690674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86687460..86689483-chr11:86689488..86692013,2	K562	blood:
2	chr11:86689490..86692412-chr11:86713535..86717374,4	MCF-7	breast:
3	chr11:86663621..86667087-chr11:86690661..86693400,3	K562	blood:
4	chr11:86684602..86687638-chr11:86688289..86691247,3	K562	blood:

Variant related genes	Relation type
ENSG00000174804	Chromatin interaction
ENSG00000246523	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4943965	0.90[AMR][1000 genomes]
rs4944642	0.90[AMR][1000 genomes]
rs4944644	0.90[AMR][1000 genomes]
rs4944649	0.90[AMR][1000 genomes]
rs57561938	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61735303	0.90[AMR][1000 genomes]
rs61735304	0.90[AMR][1000 genomes]
rs7106960	0.90[AMR][1000 genomes]
rs7121504	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86684800-86691600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:86687400-86691800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:86688400-86694600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:86688600-86691400	Enhancers	Ovary	ovary
5	chr11:86689400-86691800	Enhancers	Psoas Muscle	Psoas
6	chr11:86689400-86692400	Enhancers	Left Ventricle	heart
7	chr11:86689400-86696000	Enhancers	HepG2	liver
8	chr11:86689600-86690800	Weak transcription	Spleen	Spleen
9	chr11:86689600-86691000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:86689600-86691800	Enhancers	Fetal Muscle Leg	muscle
11	chr11:86689800-86690800	Weak transcription	Pancreas	Pancrea
12	chr11:86689800-86690800	Weak transcription	Right Atrium	heart
13	chr11:86689800-86694000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:86689800-86695600	Enhancers	Liver	Liver
15	chr11:86689800-86697200	Enhancers	Adipose Nuclei	Adipose
16	chr11:86690000-86691400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:86690200-86690800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:86690200-86693800	Weak transcription	Hela-S3	cervix
19	chr11:86690400-86691600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:86690600-86691600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:86690600-86691800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr11:86690600-86691800	Enhancers	HSMMtube	muscle
23	chr11:86690600-86693200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:86690600-86694000	Weak transcription	HUVEC	blood vessel

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