Variant report

Variant	rs7121504
Chromosome Location	chr11:86654089-86654090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86652072..86654729-chr11:86660498..86663493,3	MCF-7	breast:
2	chr11:86654040..86659065-chr11:86663507..86667828,10	K562	blood:
3	chr11:86649897..86655027-chr11:86664913..86668349,5	MCF-7	breast:
4	chr11:86651265..86655109-chr11:86664872..86666696,3	MCF-7	breast:
5	chr11:86652550..86654978-chr11:86658385..86660560,2	K562	blood:

Variant related genes	Relation type
ENSG00000174804	Chromatin interaction
ENSG00000246523	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17149639	0.90[AMR][1000 genomes]
rs17758742	0.81[AMR][1000 genomes]
rs4943965	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944642	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944649	1.00[AMR][1000 genomes]
rs57561938	0.81[AMR][1000 genomes]
rs61735303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61735304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86643600-86663200	Weak transcription	Placenta	Placenta
2	chr11:86645000-86656800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:86646000-86662000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:86647000-86662400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:86649800-86664600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:86650200-86658200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:86650200-86659600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:86651000-86656800	Weak transcription	Fetal Brain Male	brain
9	chr11:86651400-86660600	Weak transcription	Brain Angular Gyrus	brain
10	chr11:86651400-86664200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:86651600-86654400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr11:86651600-86662200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:86651600-86663200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:86651800-86655600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:86651800-86658000	Weak transcription	Spleen	Spleen
16	chr11:86651800-86658400	Weak transcription	NH-A	brain
17	chr11:86651800-86659600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:86651800-86659800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:86651800-86662600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:86651800-86662600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:86651800-86662600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:86651800-86663000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:86651800-86663200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:86651800-86664800	Weak transcription	Esophagus	oesophagus
25	chr11:86652000-86662200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:86652000-86662600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:86652000-86663000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:86652400-86655000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:86652400-86662400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:86652400-86664000	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:86652400-86664000	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr11:86652600-86654200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr11:86652600-86655200	Weak transcription	Fetal Muscle Trunk	muscle
34	chr11:86652600-86656800	Weak transcription	Small Intestine	intestine
35	chr11:86652600-86657200	Weak transcription	Lung	lung
36	chr11:86652600-86657200	Weak transcription	K562	blood
37	chr11:86652800-86654200	Enhancers	Stomach Smooth Muscle	stomach
38	chr11:86652800-86664200	Weak transcription	Brain Substantia Nigra	brain
39	chr11:86653000-86662200	Weak transcription	Fetal Intestine Large	intestine
40	chr11:86653200-86654200	Enhancers	Adipose Nuclei	Adipose
41	chr11:86653200-86656600	Weak transcription	Aorta	Aorta
42	chr11:86653200-86657400	Weak transcription	Right Ventricle	heart
43	chr11:86653200-86658400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:86653200-86659000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr11:86653200-86659800	Weak transcription	Fetal Intestine Small	intestine
46	chr11:86653200-86659800	Weak transcription	Pancreas	Pancrea
47	chr11:86653200-86664200	Weak transcription	Duodenum Mucosa	Duodenum
48	chr11:86653200-86665800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr11:86653400-86654200	Enhancers	Fetal Kidney	kidney
50	chr11:86653400-86654200	Enhancers	HUVEC	blood vessel

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