Variant report

Variant	rs17151220
Chromosome Location	chr7:105336616-105336617
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:105336445-105338158	H1-hESC	embryonic stem cell:	n/a	n/a
2	NR3C1	chr7:105336262-105336695	A549	lung:	n/a	n/a
3	NR3C1	chr7:105336244-105336662	A549	lung:	n/a	n/a

Variant related genes	Relation type
ATXN7L1	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11760426	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766337	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151401	0.81[ASN][1000 genomes]
rs62487045	0.88[ASN][1000 genomes]
rs62487046	0.81[ASN][1000 genomes]
rs62487047	0.81[ASN][1000 genomes]
rs73717254	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528739	chr7:105318058-105346117	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17151220	PAQR7	trans	parietal	SCAN
rs17151220	ATXN7L1	cis	parietal	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105330400-105352200	Weak transcription	Gastric	stomach
2	chr7:105331600-105340600	Weak transcription	Spleen	Spleen
3	chr7:105331800-105338600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:105332200-105353200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:105332400-105337800	Weak transcription	Lung	lung
6	chr7:105332600-105339200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:105332600-105347600	Weak transcription	Ovary	ovary
8	chr7:105332600-105348000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:105332600-105348400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:105332600-105352200	Weak transcription	Aorta	Aorta
11	chr7:105332800-105336800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:105332800-105337400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr7:105332800-105338000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:105332800-105343800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:105332800-105343800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:105332800-105344000	Weak transcription	Brain Anterior Caudate	brain
17	chr7:105332800-105344000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:105332800-105344000	Weak transcription	NHDF-Ad	bronchial
19	chr7:105332800-105347000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:105332800-105347000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:105332800-105347000	Weak transcription	Fetal Lung	lung
22	chr7:105332800-105347600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr7:105332800-105347800	Weak transcription	Colon Smooth Muscle	Colon
24	chr7:105332800-105347800	Weak transcription	Pancreas	Pancrea
25	chr7:105332800-105347800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:105332800-105348200	Weak transcription	Fetal Heart	heart
27	chr7:105332800-105348200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr7:105332800-105348400	Weak transcription	Adipose Nuclei	Adipose
29	chr7:105332800-105348400	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr7:105332800-105349800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:105332800-105350200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr7:105332800-105351400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr7:105332800-105351600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr7:105332800-105352000	Weak transcription	Colonic Mucosa	Colon
35	chr7:105333000-105350400	Weak transcription	Fetal Brain Female	brain
36	chr7:105333400-105338400	Weak transcription	Placenta	Placenta
37	chr7:105333400-105346000	Weak transcription	Right Atrium	heart
38	chr7:105333400-105347800	Weak transcription	Primary T cells from cord blood	blood
39	chr7:105333400-105348000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr7:105333600-105348000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr7:105334400-105336800	Strong transcription	Fetal Stomach	stomach
42	chr7:105334400-105337600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr7:105334400-105347400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr7:105334600-105347800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr7:105334600-105347800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr7:105334600-105348000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr7:105334800-105347400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr7:105335000-105336800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr7:105335000-105336800	Strong transcription	Fetal Intestine Small	intestine
50	chr7:105335000-105337000	Strong transcription	Fetal Intestine Large	intestine

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