Variant report

Variant	rs62487046
Chromosome Location	chr7:105347089-105347090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105336963..105338472-chr7:105345380..105347416,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11760426	0.81[ASN][1000 genomes]
rs11766337	0.81[ASN][1000 genomes]
rs11771950	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12668158	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17151220	0.81[ASN][1000 genomes]
rs17151401	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151463	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34311098	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs35984964	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs548678	0.82[ASN][1000 genomes]
rs62481256	0.89[ASN][1000 genomes]
rs62487045	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62487047	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105330400-105352200	Weak transcription	Gastric	stomach
2	chr7:105332200-105353200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:105332600-105347600	Weak transcription	Ovary	ovary
4	chr7:105332600-105348000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:105332600-105348400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:105332600-105352200	Weak transcription	Aorta	Aorta
7	chr7:105332800-105347600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:105332800-105347800	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:105332800-105347800	Weak transcription	Pancreas	Pancrea
10	chr7:105332800-105347800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr7:105332800-105348200	Weak transcription	Fetal Heart	heart
12	chr7:105332800-105348200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:105332800-105348400	Weak transcription	Adipose Nuclei	Adipose
14	chr7:105332800-105348400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:105332800-105349800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:105332800-105350200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr7:105332800-105351400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr7:105332800-105351600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:105332800-105352000	Weak transcription	Colonic Mucosa	Colon
20	chr7:105333000-105350400	Weak transcription	Fetal Brain Female	brain
21	chr7:105333400-105347800	Weak transcription	Primary T cells from cord blood	blood
22	chr7:105333400-105348000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:105333600-105348000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr7:105334400-105347400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr7:105334600-105347800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr7:105334600-105347800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr7:105334600-105348000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:105334800-105347400	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr7:105336800-105347600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:105336800-105347800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr7:105336800-105348400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:105337000-105353800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:105337200-105350400	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:105338800-105347800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:105339000-105347600	Weak transcription	Fetal Stomach	stomach
36	chr7:105340600-105347800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:105340600-105348000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr7:105340600-105351400	Weak transcription	Placenta	Placenta
39	chr7:105342800-105347800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr7:105342800-105347800	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr7:105342800-105348200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr7:105342800-105350400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr7:105342800-105351000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr7:105342800-105351200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr7:105343000-105347600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr7:105343000-105348000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr7:105343000-105351200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr7:105343800-105348000	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr7:105344200-105349200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr7:105344600-105352000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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