Variant report

Variant	rs35984964
Chromosome Location	chr7:105353902-105353903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11771950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12668158	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151401	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17151463	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34311098	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs548678	0.82[ASN][1000 genomes]
rs62481256	0.89[ASN][1000 genomes]
rs62487045	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62487046	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62487047	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105346000-105354600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:105346200-105354200	Weak transcription	Psoas Muscle	Psoas
3	chr7:105346200-105354400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:105349000-105374800	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:105349200-105354800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:105349200-105355400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr7:105349800-105356200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr7:105350400-105354600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr7:105350400-105354800	ZNF genes & repeats	Fetal Intestine Small	intestine
10	chr7:105351200-105354000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr7:105351200-105354400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
12	chr7:105351200-105354600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
13	chr7:105351400-105354200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
14	chr7:105351400-105354400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
15	chr7:105351400-105355000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:105351600-105354400	ZNF genes & repeats	Fetal Intestine Large	intestine
17	chr7:105351800-105354400	ZNF genes & repeats	Fetal Brain Female	brain
18	chr7:105352000-105354200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:105352200-105354000	ZNF genes & repeats	Fetal Muscle Leg	muscle
20	chr7:105352200-105354800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr7:105352400-105362600	Weak transcription	Stomach Mucosa	stomach
22	chr7:105352600-105354000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:105352600-105354400	Strong transcription	Primary T cells from cord blood	blood
24	chr7:105352600-105355800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr7:105352600-105358800	Weak transcription	Gastric	stomach
26	chr7:105352600-105388600	Weak transcription	Aorta	Aorta
27	chr7:105352800-105354000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:105352800-105354400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr7:105352800-105359800	Weak transcription	Fetal Lung	lung
30	chr7:105352800-105361800	Weak transcription	Brain Hippocampus Middle	brain
31	chr7:105352800-105364000	Weak transcription	Lung	lung
32	chr7:105352800-105364000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr7:105352800-105383000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:105352800-105383800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:105352800-105392400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr7:105353000-105354000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr7:105353000-105354400	Enhancers	Adipose Nuclei	Adipose
38	chr7:105353000-105355400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:105353000-105359000	Weak transcription	Liver	Liver
40	chr7:105353000-105361800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr7:105353200-105358600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr7:105353400-105354000	ZNF genes & repeats	Spleen	Spleen
43	chr7:105353400-105354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:105353400-105374000	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr7:105353600-105354200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr7:105353600-105354400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
47	chr7:105353600-105354400	Strong transcription	Ovary	ovary
48	chr7:105353600-105354800	Strong transcription	Fetal Stomach	stomach
49	chr7:105353600-105354800	Enhancers	Hela-S3	cervix
50	chr7:105353600-105355000	Enhancers	HSMMtube	muscle

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