Variant report

Variant	rs12668158
Chromosome Location	chr7:105355368-105355369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105354511..105357215-chr7:105359337..105361077,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11771950	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151401	0.95[ASN][1000 genomes]
rs17151463	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs34311098	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35984964	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs548678	0.82[ASN][1000 genomes]
rs62481256	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62487045	0.88[ASN][1000 genomes]
rs62487046	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62487047	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs684660	1.00[CHB][hapmap]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105349000-105374800	Weak transcription	Colon Smooth Muscle	Colon
2	chr7:105349200-105355400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:105349800-105356200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
4	chr7:105352400-105362600	Weak transcription	Stomach Mucosa	stomach
5	chr7:105352600-105355800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:105352600-105358800	Weak transcription	Gastric	stomach
7	chr7:105352600-105388600	Weak transcription	Aorta	Aorta
8	chr7:105352800-105359800	Weak transcription	Fetal Lung	lung
9	chr7:105352800-105361800	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:105352800-105364000	Weak transcription	Lung	lung
11	chr7:105352800-105364000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:105352800-105383000	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr7:105352800-105383800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr7:105352800-105392400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:105353000-105355400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:105353000-105359000	Weak transcription	Liver	Liver
17	chr7:105353000-105361800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:105353200-105358600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr7:105353400-105374000	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr7:105353600-105355600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:105353600-105356000	Enhancers	Fetal Heart	heart
22	chr7:105353800-105355600	Enhancers	Left Ventricle	heart
23	chr7:105353800-105356400	Enhancers	Placenta	Placenta
24	chr7:105353800-105360000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:105353800-105373000	Weak transcription	Esophagus	oesophagus
26	chr7:105354000-105358800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:105354000-105361800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr7:105354000-105374800	Weak transcription	Spleen	Spleen
29	chr7:105354200-105358600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr7:105354200-105359400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:105354400-105355600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:105354400-105358600	Weak transcription	Fetal Brain Female	brain
33	chr7:105354400-105358800	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr7:105354400-105359000	Weak transcription	Adipose Nuclei	Adipose
35	chr7:105354400-105359000	Weak transcription	Right Atrium	heart
36	chr7:105354400-105360000	Weak transcription	Fetal Intestine Large	intestine
37	chr7:105354400-105362000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr7:105354400-105382400	Weak transcription	Primary T cells from cord blood	blood
39	chr7:105354400-105390000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr7:105354400-105399800	Weak transcription	Ovary	ovary
41	chr7:105354600-105358600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr7:105354600-105359000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr7:105354600-105359000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr7:105354600-105392000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:105354800-105355800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr7:105354800-105355800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:105354800-105355800	Weak transcription	Right Ventricle	heart
48	chr7:105354800-105358600	Weak transcription	Fetal Intestine Small	intestine
49	chr7:105354800-105358600	Weak transcription	Fetal Stomach	stomach
50	chr7:105354800-105358600	Weak transcription	Psoas Muscle	Psoas

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