Variant report

Variant	rs17151747
Chromosome Location	chr7:25535895-25535896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10230604	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10242326	0.95[ASN][1000 genomes]
rs1027672	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10486459	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12667972	0.93[ASN][1000 genomes]
rs12668322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12668343	0.96[ASN][1000 genomes]
rs12672646	0.97[ASN][1000 genomes]
rs12673720	0.97[ASN][1000 genomes]
rs1393675	0.98[ASN][1000 genomes]
rs17151744	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17151750	1.00[ASN][1000 genomes]
rs17151753	1.00[ASN][1000 genomes]
rs17151766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17151770	0.97[ASN][1000 genomes]
rs61238582	0.90[ASN][1000 genomes]
rs731007	0.80[ASN][1000 genomes]
rs731008	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73275511	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73275554	0.94[ASN][1000 genomes]
rs7796244	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25532000-25537000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:25533600-25536800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr7:25533800-25536000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:25534200-25536400	Enhancers	Fetal Lung	lung
5	chr7:25534200-25536800	Enhancers	Ovary	ovary
6	chr7:25534200-25536800	Enhancers	Spleen	Spleen
7	chr7:25534400-25536200	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:25534400-25536200	Enhancers	Adipose Nuclei	Adipose
9	chr7:25534400-25536200	Enhancers	Fetal Stomach	stomach
10	chr7:25534400-25536800	Enhancers	Lung	lung
11	chr7:25534400-25537200	Enhancers	Fetal Muscle Leg	muscle
12	chr7:25534600-25536000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:25534600-25536800	Enhancers	Right Atrium	heart
14	chr7:25534600-25536800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr7:25534800-25536200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr7:25534800-25536200	Enhancers	Colon Smooth Muscle	Colon
17	chr7:25534800-25536200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr7:25534800-25536600	Enhancers	Brain Anterior Caudate	brain
19	chr7:25535000-25536200	Enhancers	Left Ventricle	heart
20	chr7:25535000-25536200	Enhancers	Stomach Smooth Muscle	stomach
21	chr7:25535000-25536400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:25535000-25536800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:25535200-25536000	Enhancers	Primary B cells from peripheral blood	blood
24	chr7:25535200-25536000	Enhancers	Liver	Liver
25	chr7:25535200-25536200	Enhancers	Duodenum Mucosa	Duodenum
26	chr7:25535400-25536000	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr7:25535400-25536000	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr7:25535400-25536200	Enhancers	Primary T cells from cord blood	blood
29	chr7:25535400-25536400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr7:25535400-25536400	Enhancers	K562	blood
31	chr7:25535600-25536000	Enhancers	Primary B cells from cord blood	blood
32	chr7:25535600-25536000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr7:25535600-25536000	Weak transcription	Brain Substantia Nigra	brain
34	chr7:25535600-25536200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr7:25535600-25536800	Enhancers	Fetal Brain Male	brain
36	chr7:25535600-25536800	Enhancers	Fetal Brain Female	brain
37	chr7:25535800-25536000	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr7:25535800-25536200	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr7:25535800-25536200	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr7:25535800-25536200	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr7:25535800-25536200	Enhancers	GM12878-XiMat	blood
42	chr7:25535800-25536600	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr7:25535800-25536800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr7:25535800-25536800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links