Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:25531602..25535172-chr7:25538144..25541454,4	K562	blood:
2	chr7:25533819..25535783-chr7:25539777..25541855,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10230604	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10242326	0.94[ASN][1000 genomes]
rs1027672	0.87[EUR][1000 genomes]
rs10486459	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12667972	0.94[ASN][1000 genomes]
rs12668322	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12668343	0.97[ASN][1000 genomes]
rs12672646	0.96[ASN][1000 genomes]
rs12673720	0.96[ASN][1000 genomes]
rs1393675	0.99[ASN][1000 genomes]
rs17151744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17151747	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17151750	0.99[ASN][1000 genomes]
rs17151753	0.99[ASN][1000 genomes]
rs17151766	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17151770	0.96[ASN][1000 genomes]
rs61238582	0.91[ASN][1000 genomes]
rs731008	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73275554	0.93[ASN][1000 genomes]
rs7796244	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606426	chr7:25254125-25621579	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25530800-25534800	Weak transcription	Stomach Mucosa	stomach
2	chr7:25532000-25537000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:25533200-25534800	Enhancers	Fetal Brain Male	brain
4	chr7:25533600-25536800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:25533800-25534800	Enhancers	K562	blood
6	chr7:25533800-25536000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:25534000-25534400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:25534200-25535000	Enhancers	Fetal Brain Female	brain
9	chr7:25534200-25535800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:25534200-25536400	Enhancers	Fetal Lung	lung
11	chr7:25534200-25536800	Enhancers	Ovary	ovary
12	chr7:25534200-25536800	Enhancers	Spleen	Spleen

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