Variant report

Variant	rs17151843
Chromosome Location	chr8:10235464-10235465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10087341	0.87[ASN][1000 genomes]
rs10096337	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10105867	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10283145	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11774221	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11777976	0.82[JPT][hapmap]
rs11990519	0.82[JPT][hapmap]
rs13252982	0.82[JPT][hapmap]
rs13254263	0.82[JPT][hapmap]
rs17151854	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs17151859	1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs17708276	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17709397	1.00[JPT][hapmap]
rs17765901	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17767019	0.82[JPT][hapmap]
rs1986676	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2001364	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28402777	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs28406568	0.82[ASN][1000 genomes]
rs28491054	0.87[ASN][1000 genomes]
rs2952185	1.00[CHD][hapmap]
rs2975680	1.00[CHB][hapmap]
rs2975682	1.00[CHB][hapmap]
rs3750310	0.82[JPT][hapmap]
rs3812495	1.00[ASN][1000 genomes]
rs4074083	0.82[JPT][hapmap]
rs4342552	0.82[JPT][hapmap]
rs4433149	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4526367	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4610752	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4840480	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs4841352	0.82[JPT][hapmap]
rs6601443	1.00[CHD][hapmap]
rs6601451	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs68071218	1.00[ASN][1000 genomes]
rs6984111	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs6989657	0.82[JPT][hapmap]
rs7813873	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7824675	1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7831557	0.82[JPT][hapmap]
rs7833781	0.82[JPT][hapmap]
rs7841921	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1025557	chr8:10216726-10555187	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192600-10282400	Weak transcription	Gastric	stomach
2	chr8:10224000-10255800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:10228600-10247800	Weak transcription	Liver	Liver
4	chr8:10229000-10239400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:10232800-10235600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:10233000-10235600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:10233400-10235600	Enhancers	Fetal Brain Female	brain
8	chr8:10233400-10236200	Enhancers	Fetal Muscle Leg	muscle
9	chr8:10233600-10235800	Enhancers	Right Atrium	heart
10	chr8:10233600-10236200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr8:10233800-10236800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:10233800-10240000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:10233800-10241400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr8:10233800-10252400	Weak transcription	Fetal Brain Male	brain
15	chr8:10234000-10236200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:10234000-10241200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:10234600-10236000	Enhancers	Left Ventricle	heart
18	chr8:10235000-10235600	Enhancers	Duodenum Mucosa	Duodenum
19	chr8:10235000-10236000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
20	chr8:10235000-10236200	Enhancers	Pancreas	Pancrea
21	chr8:10235200-10235600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr8:10235200-10235800	Enhancers	Psoas Muscle	Psoas
23	chr8:10235200-10236200	Enhancers	Right Ventricle	heart
24	chr8:10235200-10236200	Enhancers	Spleen	Spleen
25	chr8:10235200-10237200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:10235200-10237400	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr8:10235200-10252400	Weak transcription	Brain Hippocampus Middle	brain
28	chr8:10235400-10235600	Enhancers	HSMMtube	muscle
29	chr8:10235400-10235800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr8:10235400-10237400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:10235400-10237600	Enhancers	H1 Cell Line	embryonic stem cell
32	chr8:10235400-10239800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:10235400-10256800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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