Variant report

Variant	rs17152190
Chromosome Location	chr5:124292608-124292609
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10519791	0.87[AMR][1000 genomes]
rs1823087	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55763065	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6887807	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73782535	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73782537	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73782555	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv599657	chr5:124284253-124330522	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124284200-124301800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124284800-124294000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:124287600-124297800	Weak transcription	Adipose Nuclei	Adipose
4	chr5:124288800-124298800	Weak transcription	Primary B cells from cord blood	blood
5	chr5:124292000-124293200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr5:124292000-124293600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr5:124292200-124293000	Enhancers	Brain Substantia Nigra	brain
8	chr5:124292200-124293000	Enhancers	Psoas Muscle	Psoas
9	chr5:124292600-124293000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:124292600-124297800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr5:124292600-124297800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr5:124292600-124298000	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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