Variant report

Variant	rs73782535
Chromosome Location	chr5:124296096-124296097
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17152190	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1823087	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55763065	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6887807	0.97[AFR][1000 genomes]
rs73782537	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73782542	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73782555	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv599657	chr5:124284253-124330522	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124284200-124301800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124287600-124297800	Weak transcription	Adipose Nuclei	Adipose
3	chr5:124288800-124298800	Weak transcription	Primary B cells from cord blood	blood
4	chr5:124292600-124297800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:124292600-124297800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:124292600-124298000	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:124293000-124298200	Weak transcription	Brain Substantia Nigra	brain
8	chr5:124293600-124297400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:124295400-124296200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:124295400-124296200	Enhancers	HMEC	breast
11	chr5:124295600-124299000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:124295800-124296200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:124296000-124296200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:124296000-124296200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr5:124296000-124296600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:124296000-124296600	Enhancers	Primary B cells from peripheral blood	blood
17	chr5:124296000-124296600	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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