Variant report

Variant	rs17152294
Chromosome Location	chr5:124479785-124479786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13172601	1.00[AMR][1000 genomes]
rs6890321	1.00[AMR][1000 genomes]
rs73303729	1.00[AMR][1000 genomes]
rs73303731	1.00[AMR][1000 genomes]
rs73303733	1.00[AMR][1000 genomes]
rs73303736	1.00[AMR][1000 genomes]
rs73305853	1.00[AMR][1000 genomes]
rs73305854	1.00[AMR][1000 genomes]
rs73305856	1.00[AMR][1000 genomes]
rs73305857	1.00[AMR][1000 genomes]
rs73305859	1.00[AMR][1000 genomes]
rs73305862	1.00[AMR][1000 genomes]
rs73305867	1.00[AMR][1000 genomes]
rs73305869	1.00[AMR][1000 genomes]
rs73305873	1.00[AMR][1000 genomes]
rs73305876	1.00[AMR][1000 genomes]
rs73305884	1.00[AMR][1000 genomes]
rs73307808	0.87[AFR][1000 genomes]
rs73307892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599658	chr5:124459547-124513012	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124471400-124484600	Weak transcription	HSMM	muscle
2	chr5:124477200-124488200	Weak transcription	HUVEC	blood vessel
3	chr5:124477400-124484600	Weak transcription	Adipose Nuclei	Adipose
4	chr5:124478800-124484200	Weak transcription	NHDF-Ad	bronchial
5	chr5:124479200-124480000	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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