Variant report

Variant	rs73305862
Chromosome Location	chr5:124450741-124450742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13172601	1.00[AMR][1000 genomes]
rs17152294	1.00[AMR][1000 genomes]
rs6890321	1.00[AMR][1000 genomes]
rs73303729	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303731	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303733	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303736	1.00[AMR][1000 genomes]
rs73305853	1.00[AMR][1000 genomes]
rs73305854	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305856	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305857	1.00[AMR][1000 genomes]
rs73305859	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305873	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305876	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305884	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73307892	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3380266	chr5:124450441-124450783	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124445800-124455800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:124448200-124450800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:124448200-124453000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:124448200-124453000	Weak transcription	NHLF	lung
5	chr5:124448400-124453400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:124449200-124454000	Weak transcription	Dnd41	blood
7	chr5:124449600-124450800	Weak transcription	HSMM	muscle
8	chr5:124449800-124450800	Weak transcription	NHDF-Ad	bronchial
9	chr5:124450200-124451400	Enhancers	Liver	Liver
10	chr5:124450600-124451400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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