Variant report

Variant	rs17152551
Chromosome Location	chr5:124608570-124608571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11241798	0.89[ASN][1000 genomes]
rs11954918	1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs11956263	0.88[ASN][1000 genomes]
rs1371382	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1562126	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59115551	0.93[ASN][1000 genomes]
rs59456631	0.93[ASN][1000 genomes]
rs60808478	0.90[ASN][1000 genomes]
rs62373298	0.87[ASN][1000 genomes]
rs62373302	0.90[ASN][1000 genomes]
rs6880511	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs6890859	0.85[ASN][1000 genomes]
rs920388	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124593200-124609200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124599600-124608600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:124599600-124608600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:124599800-124613400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:124604200-124612400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:124605800-124609000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:124605800-124611800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:124606000-124608800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:124606000-124609200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:124606000-124609200	Weak transcription	Stomach Mucosa	stomach
11	chr5:124607000-124609000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr5:124607200-124609000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:124608000-124608800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:124608000-124609000	Weak transcription	HUVEC	blood vessel
15	chr5:124608200-124609200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:124608200-124609400	Enhancers	Brain Germinal Matrix	brain
17	chr5:124608400-124609000	Enhancers	Primary hematopoietic stem cells	blood
18	chr5:124608400-124612800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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