Variant report

Variant	rs59456631
Chromosome Location	chr5:124599070-124599071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11241798	0.96[ASN][1000 genomes]
rs11954918	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11956263	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1371382	0.93[ASN][1000 genomes]
rs1562126	0.90[ASN][1000 genomes]
rs17152551	0.93[ASN][1000 genomes]
rs59115551	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60808478	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62373298	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs62373302	0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6880511	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890859	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs920388	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882823	chr5:124569471-124639468	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124593200-124609200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124597400-124599600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:124597800-124599600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:124598400-124600200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:124598400-124600200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:124598600-124599200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:124598600-124599400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:124598600-124599800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:124598600-124599800	Enhancers	HMEC	breast
10	chr5:124598600-124599800	Enhancers	NHEK	skin
11	chr5:124599000-124599400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:124599000-124599600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:124599000-124599600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr5:124599000-124599800	Enhancers	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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