Variant report

Variant	rs17153603
Chromosome Location	chr7:79848272-79848273
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD36-3	chr7:79847994-79848604	NONHSAT121733

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13222403	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17153599	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2886611	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35405368	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3801356	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3890739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4458811	0.91[AFR][1000 genomes]
rs4610665	0.93[AFR][1000 genomes]
rs56284710	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56343702	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59871716	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6954752	0.89[AFR][1000 genomes]
rs7800163	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9641782	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79815000-79850200	Weak transcription	Lung	lung
2	chr7:79815200-79859600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:79816400-79854800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:79817000-79851200	Weak transcription	Aorta	Aorta
5	chr7:79820600-79853800	Weak transcription	Left Ventricle	heart
6	chr7:79825400-79856600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:79829200-79853000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:79830800-79848400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:79831000-79853800	Weak transcription	Gastric	stomach
10	chr7:79831600-79850800	Weak transcription	Fetal Stomach	stomach
11	chr7:79831800-79861200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:79832400-79855000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:79834000-79850600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr7:79836000-79859600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:79836600-79861000	Weak transcription	HSMMtube	muscle
16	chr7:79838000-79849400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr7:79838800-79850400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:79839600-79850200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:79840000-79853800	Weak transcription	Brain Anterior Caudate	brain
20	chr7:79840200-79849400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:79840200-79850400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:79840400-79851600	Weak transcription	Small Intestine	intestine
23	chr7:79840800-79850400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:79841200-79853800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:79841200-79854000	Weak transcription	Fetal Intestine Small	intestine
26	chr7:79842800-79853600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:79843000-79852600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr7:79843000-79862800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:79843400-79850800	Weak transcription	Fetal Intestine Large	intestine
30	chr7:79843400-79853200	Weak transcription	Brain Substantia Nigra	brain
31	chr7:79843400-79853800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:79843800-79853200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:79843800-79853600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:79844000-79849000	Enhancers	Dnd41	blood
35	chr7:79844200-79849600	Enhancers	Fetal Brain Male	brain
36	chr7:79844400-79853200	Weak transcription	Brain Germinal Matrix	brain
37	chr7:79844400-79853600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr7:79845800-79848800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr7:79845800-79848800	Weak transcription	Ovary	ovary
40	chr7:79845800-79850800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr7:79845800-79851400	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:79845800-79853600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr7:79845800-79853800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr7:79846000-79848800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:79846200-79850600	Weak transcription	Liver	Liver
46	chr7:79846400-79850000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:79846600-79848800	Weak transcription	Fetal Brain Female	brain
48	chr7:79846800-79850800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr7:79846800-79861000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr7:79847000-79848800	Weak transcription	Adipose Nuclei	Adipose

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