Variant report

Variant	rs9641782
Chromosome Location	chr7:79852395-79852396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13222403	0.86[CEU][hapmap];0.92[GIH][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs17153599	0.90[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap]
rs17153603	0.85[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2886611	0.86[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs35405368	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3801356	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs3890739	0.86[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56284710	0.92[EUR][1000 genomes]
rs56343702	0.86[EUR][1000 genomes]
rs59871716	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7458619	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79815200-79859600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:79816400-79854800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:79820600-79853800	Weak transcription	Left Ventricle	heart
4	chr7:79825400-79856600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:79829200-79853000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:79831000-79853800	Weak transcription	Gastric	stomach
7	chr7:79831800-79861200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:79832400-79855000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:79836000-79859600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:79836600-79861000	Weak transcription	HSMMtube	muscle
11	chr7:79840000-79853800	Weak transcription	Brain Anterior Caudate	brain
12	chr7:79841200-79853800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr7:79841200-79854000	Weak transcription	Fetal Intestine Small	intestine
14	chr7:79842800-79853600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:79843000-79852600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:79843000-79862800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:79843400-79853200	Weak transcription	Brain Substantia Nigra	brain
18	chr7:79843400-79853800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:79843800-79853200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:79843800-79853600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:79844400-79853200	Weak transcription	Brain Germinal Matrix	brain
22	chr7:79844400-79853600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr7:79845800-79853600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr7:79845800-79853800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:79846800-79861000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:79847000-79853600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr7:79847000-79853800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:79847200-79853800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr7:79847200-79853800	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:79847200-79854800	Weak transcription	Fetal Kidney	kidney
31	chr7:79847400-79854400	Weak transcription	NHDF-Ad	bronchial
32	chr7:79848600-79854400	Weak transcription	Osteobl	bone
33	chr7:79848800-79860600	Weak transcription	NHEK	skin
34	chr7:79849000-79853800	Weak transcription	Brain Angular Gyrus	brain
35	chr7:79849000-79854400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr7:79849200-79853600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr7:79849200-79853600	Weak transcription	Placenta	Placenta
38	chr7:79849200-79854000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:79849200-79859600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:79849400-79854400	Weak transcription	HSMM	muscle
41	chr7:79849400-79859400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:79849400-79860600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr7:79849600-79853600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr7:79849600-79853600	Weak transcription	Fetal Brain Male	brain
45	chr7:79849600-79853800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr7:79849600-79854800	Weak transcription	Ovary	ovary
47	chr7:79849600-79859600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr7:79849600-79860600	Weak transcription	HMEC	breast
49	chr7:79849800-79853400	Weak transcription	Adipose Nuclei	Adipose
50	chr7:79850000-79853000	Weak transcription	Fetal Brain Female	brain

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