Variant report

Variant	rs17154356
Chromosome Location	chr7:80355709-80355710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80353835..80356426-chr7:80361541..80363244,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16886843	0.83[AFR][1000 genomes]
rs16886848	0.83[AFR][1000 genomes]
rs17154330	1.00[AFR][1000 genomes]
rs17154368	1.00[AFR][1000 genomes]
rs17154373	0.83[AFR][1000 genomes]
rs6969946	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80348600-80356800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:80350600-80355800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr7:80352000-80358600	Weak transcription	Psoas Muscle	Psoas
4	chr7:80352600-80355800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr7:80353200-80356200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:80353400-80358600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:80354000-80355800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:80354000-80356200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:80354000-80358600	Weak transcription	Adipose Nuclei	Adipose
10	chr7:80354000-80358600	Weak transcription	Ovary	ovary
11	chr7:80354000-80359000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr7:80354000-80359200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:80354200-80358600	Weak transcription	HMEC	breast
14	chr7:80354200-80358800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:80354400-80355800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:80354400-80356400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr7:80354400-80358400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr7:80354600-80358600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr7:80354800-80355800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:80354800-80356000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:80354800-80356600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:80354800-80357800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:80354800-80358400	Weak transcription	Fetal Muscle Leg	muscle
24	chr7:80354800-80358400	Weak transcription	Fetal Stomach	stomach
25	chr7:80354800-80358600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:80354800-80358600	Weak transcription	Fetal Lung	lung
27	chr7:80354800-80358600	Weak transcription	HSMMtube	muscle
28	chr7:80354800-80359000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:80354800-80360200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr7:80355000-80356000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr7:80355000-80356000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:80355000-80358800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:80355000-80360600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:80355400-80356200	Weak transcription	Small Intestine	intestine
35	chr7:80355400-80356600	Enhancers	A549	lung
36	chr7:80355400-80357800	Weak transcription	NHDF-Ad	bronchial
37	chr7:80355400-80359000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr7:80355400-80365800	Weak transcription	HSMM	muscle
39	chr7:80355600-80356000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr7:80355600-80356200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr7:80355600-80358000	Weak transcription	NHLF	lung

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