Variant report

Variant	rs17154373
Chromosome Location	chr7:80366750-80366751
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16886854	0.86[AFR][1000 genomes]
rs17154330	0.83[AFR][1000 genomes]
rs17154356	0.83[AFR][1000 genomes]
rs17154368	0.83[AFR][1000 genomes]
rs6969946	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80359200-80369000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80359400-80369600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:80359400-80370200	Weak transcription	NHLF	lung
4	chr7:80359400-80378000	Weak transcription	Psoas Muscle	Psoas
5	chr7:80359600-80373800	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:80360600-80377800	Weak transcription	Left Ventricle	heart
7	chr7:80361400-80373600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:80363600-80385200	Weak transcription	Fetal Stomach	stomach
9	chr7:80365400-80367000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:80365800-80367000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr7:80365800-80367000	Enhancers	HSMM	muscle
12	chr7:80365800-80367000	Weak transcription	NH-A	brain
13	chr7:80365800-80367600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:80366200-80366800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:80366200-80370200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:80366200-80370800	Weak transcription	HMEC	breast
17	chr7:80366200-80374000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:80366400-80367800	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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