Variant report

Variant	rs17154660
Chromosome Location	chr7:80658541-80658542
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16885321	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17154670	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154694	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972692	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641965	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888551	chr7:80620397-80723062	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80658000-80659200	Enhancers	HSMM	muscle
2	chr7:80658400-80658600	Enhancers	Psoas Muscle	Psoas
3	chr7:80658400-80659000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:80658400-80659000	Enhancers	Fetal Intestine Small	intestine
5	chr7:80658400-80659000	Active TSS	Fetal Muscle Leg	muscle
6	chr7:80658400-80659000	Active TSS	HSMMtube	muscle
7	chr7:80658400-80659600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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