Variant report

Variant	rs16885321
Chromosome Location	chr7:80655089-80655090
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10236945	1.00[AMR][1000 genomes]
rs17154631	1.00[AMR][1000 genomes]
rs17154660	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17154670	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17154675	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17154694	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1983504	1.00[AMR][1000 genomes]
rs1983505	1.00[AMR][1000 genomes]
rs28844431	1.00[AMR][1000 genomes]
rs56106210	1.00[AMR][1000 genomes]
rs56170251	1.00[AMR][1000 genomes]
rs56768210	1.00[AMR][1000 genomes]
rs56914981	1.00[AMR][1000 genomes]
rs57142814	1.00[AMR][1000 genomes]
rs58630650	1.00[AMR][1000 genomes]
rs59980342	1.00[AMR][1000 genomes]
rs60118096	1.00[AMR][1000 genomes]
rs60727910	1.00[AMR][1000 genomes]
rs61698263	1.00[AMR][1000 genomes]
rs6972692	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73141414	1.00[AMR][1000 genomes]
rs73141418	1.00[AMR][1000 genomes]
rs73141427	1.00[AMR][1000 genomes]
rs73147100	1.00[AMR][1000 genomes]
rs73149007	1.00[AMR][1000 genomes]
rs73149331	1.00[AMR][1000 genomes]
rs73149333	1.00[AMR][1000 genomes]
rs73149335	1.00[AMR][1000 genomes]
rs73149341	1.00[AMR][1000 genomes]
rs73149352	1.00[AMR][1000 genomes]
rs73151191	1.00[AMR][1000 genomes]
rs73151194	1.00[AMR][1000 genomes]
rs73151225	1.00[AMR][1000 genomes]
rs73151238	1.00[AMR][1000 genomes]
rs73151244	1.00[AMR][1000 genomes]
rs73151246	1.00[AMR][1000 genomes]
rs73151250	1.00[AMR][1000 genomes]
rs73153111	1.00[AMR][1000 genomes]
rs73153114	1.00[AMR][1000 genomes]
rs73153120	1.00[AMR][1000 genomes]
rs73153125	1.00[AMR][1000 genomes]
rs9641965	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888551	chr7:80620397-80723062	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80654200-80655600	Enhancers	Hela-S3	cervix

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