Variant report

Variant	rs56170251
Chromosome Location	chr7:80780351-80780352
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80779464..80781511-chr7:80784882..80787080,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10236945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12669751	1.00[EUR][1000 genomes]
rs12672157	1.00[EUR][1000 genomes]
rs12673730	1.00[EUR][1000 genomes]
rs16885321	1.00[AMR][1000 genomes]
rs17154631	1.00[AMR][1000 genomes]
rs1983504	1.00[AMR][1000 genomes]
rs1983505	1.00[AMR][1000 genomes]
rs28844431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35411400	1.00[EUR][1000 genomes]
rs56106210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56118406	1.00[EUR][1000 genomes]
rs56768210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56914981	1.00[AMR][1000 genomes]
rs57142814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58630650	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59980342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60118096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60727910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61698263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73134411	1.00[EUR][1000 genomes]
rs73134413	1.00[EUR][1000 genomes]
rs73136532	1.00[EUR][1000 genomes]
rs73136536	1.00[EUR][1000 genomes]
rs73136546	1.00[EUR][1000 genomes]
rs73136555	1.00[EUR][1000 genomes]
rs73136559	1.00[EUR][1000 genomes]
rs73136566	1.00[EUR][1000 genomes]
rs73136569	1.00[EUR][1000 genomes]
rs73136575	1.00[EUR][1000 genomes]
rs73136579	1.00[EUR][1000 genomes]
rs73136583	1.00[EUR][1000 genomes]
rs73141414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73141418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73141427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73147062	1.00[EUR][1000 genomes]
rs73147064	1.00[EUR][1000 genomes]
rs73147071	1.00[EUR][1000 genomes]
rs73147085	1.00[EUR][1000 genomes]
rs73147100	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73149007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73149331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73149333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73149335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73149341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73149352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73149361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73149364	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73149486	1.00[EUR][1000 genomes]
rs73149488	1.00[EUR][1000 genomes]
rs73149492	1.00[EUR][1000 genomes]
rs73149498	1.00[EUR][1000 genomes]
rs73151191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73151194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73151238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73151244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73151246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73151250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73151703	1.00[EUR][1000 genomes]
rs73151726	1.00[EUR][1000 genomes]
rs73151734	1.00[EUR][1000 genomes]
rs73151743	1.00[EUR][1000 genomes]
rs73153111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73153114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73153120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73153125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80778400-80783400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:80780000-80780400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:80780000-80781200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:80780200-80780400	Enhancers	Rectal Smooth Muscle	rectum
5	chr7:80780200-80780600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:80780200-80780600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:80780200-80780600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:80780200-80780600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:80780200-80780600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:80780200-80780600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:80780200-80780600	Enhancers	Fetal Muscle Leg	muscle
12	chr7:80780200-80780600	Enhancers	HMEC	breast
13	chr7:80780200-80781000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:80780200-80781200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:80780200-80781200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:80780200-80781200	Enhancers	A549	lung
17	chr7:80780200-80781200	Enhancers	HSMM	muscle
18	chr7:80780200-80781400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr7:80780200-80781400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:80780200-80781400	Enhancers	Psoas Muscle	Psoas
21	chr7:80780200-80781400	Enhancers	NHDF-Ad	bronchial
22	chr7:80780200-80781600	Enhancers	HepG2	liver
23	chr7:80780200-80781800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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