Variant report

Variant	rs56106210
Chromosome Location	chr7:80779530-80779531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80779464..80781511-chr7:80784882..80787080,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10236945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12669751	1.00[EUR][1000 genomes]
rs12672157	1.00[EUR][1000 genomes]
rs12673730	1.00[EUR][1000 genomes]
rs16885321	1.00[AMR][1000 genomes]
rs17154631	1.00[AMR][1000 genomes]
rs1983504	1.00[AMR][1000 genomes]
rs1983505	1.00[AMR][1000 genomes]
rs28844431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35411400	1.00[EUR][1000 genomes]
rs56118406	1.00[EUR][1000 genomes]
rs56170251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56768210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56914981	1.00[AMR][1000 genomes]
rs57142814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58630650	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59980342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60118096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60727910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61698263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73134411	1.00[EUR][1000 genomes]
rs73134413	1.00[EUR][1000 genomes]
rs73136532	1.00[EUR][1000 genomes]
rs73136536	1.00[EUR][1000 genomes]
rs73136546	1.00[EUR][1000 genomes]
rs73136555	1.00[EUR][1000 genomes]
rs73136559	1.00[EUR][1000 genomes]
rs73136566	1.00[EUR][1000 genomes]
rs73136569	1.00[EUR][1000 genomes]
rs73136575	1.00[EUR][1000 genomes]
rs73136579	1.00[EUR][1000 genomes]
rs73136583	1.00[EUR][1000 genomes]
rs73141414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73141418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73141427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73147062	1.00[EUR][1000 genomes]
rs73147064	1.00[EUR][1000 genomes]
rs73147071	1.00[EUR][1000 genomes]
rs73147085	1.00[EUR][1000 genomes]
rs73147100	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73149007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73149333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73149335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73149341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73149352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73149361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73149364	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73149486	1.00[EUR][1000 genomes]
rs73149488	1.00[EUR][1000 genomes]
rs73149492	1.00[EUR][1000 genomes]
rs73149498	1.00[EUR][1000 genomes]
rs73151191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73151225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73151238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73151244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73151246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73151250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73151703	1.00[EUR][1000 genomes]
rs73151726	1.00[EUR][1000 genomes]
rs73151734	1.00[EUR][1000 genomes]
rs73151743	1.00[EUR][1000 genomes]
rs73153111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73153125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80763200-80780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80777000-80780200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:80778000-80780200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:80778400-80783400	Weak transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links