Variant report

Variant	rs17154631
Chromosome Location	chr7:80633791-80633792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80623727..80626571-chr7:80632803..80635614,2	MCF-7	breast:
2	chr7:80633226..80634840-chr7:80638668..80640562,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10236945	1.00[AMR][1000 genomes]
rs16885321	1.00[AMR][1000 genomes]
rs1983504	1.00[AMR][1000 genomes]
rs1983505	1.00[AMR][1000 genomes]
rs28844431	1.00[AMR][1000 genomes]
rs56106210	1.00[AMR][1000 genomes]
rs56170251	1.00[AMR][1000 genomes]
rs56768210	1.00[AMR][1000 genomes]
rs56914981	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58630650	1.00[AMR][1000 genomes]
rs60118096	1.00[AMR][1000 genomes]
rs60727910	1.00[AMR][1000 genomes]
rs61698263	1.00[AMR][1000 genomes]
rs73141414	1.00[AMR][1000 genomes]
rs73141418	1.00[AMR][1000 genomes]
rs73141427	1.00[AMR][1000 genomes]
rs73147100	1.00[AMR][1000 genomes]
rs73149007	1.00[AMR][1000 genomes]
rs73151191	1.00[AMR][1000 genomes]
rs73151194	1.00[AMR][1000 genomes]
rs73153111	1.00[AMR][1000 genomes]
rs73153114	1.00[AMR][1000 genomes]
rs73153120	1.00[AMR][1000 genomes]
rs73153125	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888549	chr7:80553950-80652059	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888550	chr7:80584388-80644661	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv5812	chr7:80601278-80645927	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv521001	chr7:80618038-80644661	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv888551	chr7:80620397-80723062	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80625400-80638200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80632400-80635000	Enhancers	Colon Smooth Muscle	Colon
3	chr7:80632600-80634800	Enhancers	Fetal Brain Male	brain
4	chr7:80632800-80633800	Enhancers	Fetal Brain Female	brain
5	chr7:80632800-80635800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:80633000-80634000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:80633000-80634200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:80633000-80635000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:80633200-80633800	Enhancers	HSMM	muscle
10	chr7:80633200-80634000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:80633200-80634000	Enhancers	Fetal Muscle Leg	muscle
12	chr7:80633200-80634200	Enhancers	Osteobl	bone
13	chr7:80633200-80634600	Enhancers	NHDF-Ad	bronchial
14	chr7:80633400-80633800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:80633600-80634000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:80633600-80635000	Enhancers	Adipose Nuclei	Adipose
17	chr7:80633600-80636000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr7:80633600-80638200	Weak transcription	NHEK	skin

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