Variant report

Variant	rs56914981
Chromosome Location	chr7:80643456-80643457
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80548297..80550062-chr7:80639579..80643637,5	MCF-7	breast:
2	chr7:80643095..80644798-chr7:80786806..80789312,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10236945	1.00[AMR][1000 genomes]
rs16885321	1.00[AMR][1000 genomes]
rs17154631	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1983504	1.00[AMR][1000 genomes]
rs1983505	1.00[AMR][1000 genomes]
rs28844431	1.00[AMR][1000 genomes]
rs56106210	1.00[AMR][1000 genomes]
rs56170251	1.00[AMR][1000 genomes]
rs56768210	1.00[AMR][1000 genomes]
rs57142814	1.00[AMR][1000 genomes]
rs58630650	1.00[AMR][1000 genomes]
rs59980342	1.00[AMR][1000 genomes]
rs60118096	1.00[AMR][1000 genomes]
rs60727910	1.00[AMR][1000 genomes]
rs61698263	1.00[AMR][1000 genomes]
rs73141414	1.00[AMR][1000 genomes]
rs73141418	1.00[AMR][1000 genomes]
rs73141427	1.00[AMR][1000 genomes]
rs73147100	1.00[AMR][1000 genomes]
rs73149007	1.00[AMR][1000 genomes]
rs73151191	1.00[AMR][1000 genomes]
rs73151194	1.00[AMR][1000 genomes]
rs73151225	1.00[AMR][1000 genomes]
rs73153111	1.00[AMR][1000 genomes]
rs73153114	1.00[AMR][1000 genomes]
rs73153120	1.00[AMR][1000 genomes]
rs73153125	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888549	chr7:80553950-80652059	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888550	chr7:80584388-80644661	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv5812	chr7:80601278-80645927	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv521001	chr7:80618038-80644661	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv888551	chr7:80620397-80723062	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80642200-80643800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr7:80642200-80643800	Enhancers	NHEK	skin
3	chr7:80642200-80644600	Enhancers	Hela-S3	cervix
4	chr7:80642200-80644600	Enhancers	HSMM	muscle
5	chr7:80642600-80644200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:80643200-80643800	Enhancers	NHDF-Ad	bronchial
7	chr7:80643200-80644000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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