Variant report

Variant	rs57142814
Chromosome Location	chr7:80816732-80816733
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80814937..80817852-chr7:80819181..80821334,2	K562	blood:

Variant related genes	Relation type
ENSG00000226671	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10236945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12669751	1.00[EUR][1000 genomes]
rs12672157	1.00[EUR][1000 genomes]
rs12673730	1.00[EUR][1000 genomes]
rs16885321	1.00[AMR][1000 genomes]
rs28844431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35411400	1.00[EUR][1000 genomes]
rs56106210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56118406	1.00[EUR][1000 genomes]
rs56170251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56768210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56914981	1.00[AMR][1000 genomes]
rs58630650	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs59980342	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60118096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60727910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61698263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73134411	1.00[EUR][1000 genomes]
rs73134413	1.00[EUR][1000 genomes]
rs73136532	1.00[EUR][1000 genomes]
rs73136536	1.00[EUR][1000 genomes]
rs73136546	1.00[EUR][1000 genomes]
rs73136555	1.00[EUR][1000 genomes]
rs73136559	1.00[EUR][1000 genomes]
rs73136566	1.00[EUR][1000 genomes]
rs73136569	1.00[EUR][1000 genomes]
rs73136575	1.00[EUR][1000 genomes]
rs73136579	1.00[EUR][1000 genomes]
rs73136583	1.00[EUR][1000 genomes]
rs73141414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73141418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73141427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73147062	1.00[EUR][1000 genomes]
rs73147064	1.00[EUR][1000 genomes]
rs73147071	1.00[EUR][1000 genomes]
rs73147085	1.00[EUR][1000 genomes]
rs73147100	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73149007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73149331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149352	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73149364	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73149486	1.00[EUR][1000 genomes]
rs73149488	1.00[EUR][1000 genomes]
rs73149492	1.00[EUR][1000 genomes]
rs73149498	1.00[EUR][1000 genomes]
rs73151191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73151194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73151225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73151250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151703	1.00[EUR][1000 genomes]
rs73151726	1.00[EUR][1000 genomes]
rs73151734	1.00[EUR][1000 genomes]
rs73151743	1.00[EUR][1000 genomes]
rs73153111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73153114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73153120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73153125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888557	chr7:80813081-80917148	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80803800-80819800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80805000-80819800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:80815400-80817400	Enhancers	NHDF-Ad	bronchial
4	chr7:80815800-80817200	Enhancers	Osteobl	bone
5	chr7:80816200-80816800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:80816200-80817600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:80816200-80818000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:80816200-80820000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:80816400-80817400	Enhancers	NHLF	lung
10	chr7:80816600-80816800	Enhancers	Psoas Muscle	Psoas
11	chr7:80816600-80817000	Enhancers	Right Ventricle	heart
12	chr7:80816600-80817200	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links