Variant report

Variant	rs73149364
Chromosome Location	chr7:80831769-80831770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80821320..80824042-chr7:80830231..80831994,2	MCF-7	breast:
2	chr7:80831342..80833454-chr7:80845026..80847942,2	MCF-7	breast:
3	chr7:80819982..80822822-chr7:80829998..80832398,2	MCF-7	breast:
4	chr7:80548873..80550374-chr7:80829934..80832081,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226671	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10236945	1.00[AMR][1000 genomes]
rs28844431	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56106210	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56170251	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56768210	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57142814	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58630650	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59980342	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs60118096	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60727910	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61698263	1.00[AMR][1000 genomes]
rs73141414	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73141418	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73141427	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73147100	1.00[AMR][1000 genomes]
rs73149007	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73149331	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73149333	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73149335	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73149341	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73149352	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73149361	1.00[AMR][1000 genomes]
rs73151191	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73151194	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73151225	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73151238	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73151244	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73151246	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73151250	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73153111	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73153114	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73153120	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73153125	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888557	chr7:80813081-80917148	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1023149	chr7:80817550-80928090	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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