Variant report

Variant	rs73149488
Chromosome Location	chr7:80694417-80694418
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:80525666..80528022-chr7:80693500..80695168,2	MCF-7	breast:
2	chr7:80692851..80695599-chr7:80695778..80697561,2	MCF-7	breast:
3	chr7:80550910..80552640-chr7:80692789..80694831,2	MCF-7	breast:
4	chr7:80570440..80573210-chr7:80694218..80696148,2	MCF-7	breast:
5	chr7:80544433..80547832-chr7:80692006..80696371,5	MCF-7	breast:
6	chr7:80571882..80572841-chr7:80694402..80695316,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000075223	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10236945	1.00[EUR][1000 genomes]
rs12669751	1.00[EUR][1000 genomes]
rs12672157	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12673730	1.00[EUR][1000 genomes]
rs28844431	1.00[EUR][1000 genomes]
rs35411400	1.00[EUR][1000 genomes]
rs56106210	1.00[EUR][1000 genomes]
rs56118406	1.00[EUR][1000 genomes]
rs56170251	1.00[EUR][1000 genomes]
rs56768210	1.00[EUR][1000 genomes]
rs57142814	1.00[EUR][1000 genomes]
rs59980342	1.00[EUR][1000 genomes]
rs60118096	1.00[EUR][1000 genomes]
rs60727910	1.00[EUR][1000 genomes]
rs61698263	1.00[EUR][1000 genomes]
rs73134411	1.00[EUR][1000 genomes]
rs73134413	1.00[EUR][1000 genomes]
rs73136532	1.00[EUR][1000 genomes]
rs73136536	1.00[EUR][1000 genomes]
rs73136546	1.00[EUR][1000 genomes]
rs73136555	1.00[EUR][1000 genomes]
rs73136559	1.00[EUR][1000 genomes]
rs73136566	1.00[EUR][1000 genomes]
rs73136569	1.00[EUR][1000 genomes]
rs73136575	1.00[EUR][1000 genomes]
rs73136579	1.00[EUR][1000 genomes]
rs73136583	1.00[EUR][1000 genomes]
rs73141414	1.00[EUR][1000 genomes]
rs73141418	1.00[EUR][1000 genomes]
rs73141427	1.00[EUR][1000 genomes]
rs73147062	1.00[EUR][1000 genomes]
rs73147064	1.00[EUR][1000 genomes]
rs73147071	1.00[EUR][1000 genomes]
rs73147085	1.00[EUR][1000 genomes]
rs73149007	1.00[EUR][1000 genomes]
rs73149331	1.00[EUR][1000 genomes]
rs73149333	1.00[EUR][1000 genomes]
rs73149335	1.00[EUR][1000 genomes]
rs73149341	1.00[EUR][1000 genomes]
rs73149352	1.00[EUR][1000 genomes]
rs73149361	1.00[EUR][1000 genomes]
rs73149486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149492	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73149498	1.00[EUR][1000 genomes]
rs73151191	1.00[EUR][1000 genomes]
rs73151194	1.00[EUR][1000 genomes]
rs73151225	1.00[EUR][1000 genomes]
rs73151238	1.00[EUR][1000 genomes]
rs73151244	1.00[EUR][1000 genomes]
rs73151246	1.00[EUR][1000 genomes]
rs73151250	1.00[EUR][1000 genomes]
rs73151703	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73151726	1.00[EUR][1000 genomes]
rs73151734	1.00[EUR][1000 genomes]
rs73151743	1.00[EUR][1000 genomes]
rs73153111	1.00[EUR][1000 genomes]
rs73153114	1.00[EUR][1000 genomes]
rs73153120	1.00[EUR][1000 genomes]
rs73153125	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888551	chr7:80620397-80723062	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv888552	chr7:80683308-80755310	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv888553	chr7:80683308-80766407	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80691600-80695200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:80691800-80695200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:80692600-80695200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:80693200-80695000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:80693800-80695200	Enhancers	Fetal Muscle Leg	muscle
6	chr7:80694000-80694600	Weak transcription	Aorta	Aorta
7	chr7:80694000-80695000	Weak transcription	Adipose Nuclei	Adipose

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