Variant report

Variant	rs73136559
Chromosome Location	chr7:80740878-80740879
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80740607..80742830-chr7:80744233..80747144,2	MCF-7	breast:
2	chr7:80740054..80742115-chr7:80745636..80747771,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10236945	1.00[EUR][1000 genomes]
rs12669751	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12672157	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12673730	1.00[EUR][1000 genomes]
rs17154781	0.95[ASN][1000 genomes]
rs28844431	1.00[EUR][1000 genomes]
rs35411400	1.00[EUR][1000 genomes]
rs56106210	1.00[EUR][1000 genomes]
rs56118406	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56170251	1.00[EUR][1000 genomes]
rs56768210	1.00[EUR][1000 genomes]
rs57142814	1.00[EUR][1000 genomes]
rs58308387	0.95[ASN][1000 genomes]
rs59980342	1.00[EUR][1000 genomes]
rs60118096	1.00[EUR][1000 genomes]
rs60727910	1.00[EUR][1000 genomes]
rs61698263	1.00[EUR][1000 genomes]
rs73134411	1.00[EUR][1000 genomes]
rs73134413	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73136532	1.00[EUR][1000 genomes]
rs73136536	1.00[EUR][1000 genomes]
rs73136546	1.00[EUR][1000 genomes]
rs73136552	0.95[ASN][1000 genomes]
rs73136555	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73136566	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73136569	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73136575	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73136579	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73136583	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73141414	1.00[EUR][1000 genomes]
rs73141418	1.00[EUR][1000 genomes]
rs73141427	1.00[EUR][1000 genomes]
rs73147062	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73147064	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73147071	1.00[EUR][1000 genomes]
rs73147085	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73149007	1.00[EUR][1000 genomes]
rs73149331	1.00[EUR][1000 genomes]
rs73149333	1.00[EUR][1000 genomes]
rs73149335	1.00[EUR][1000 genomes]
rs73149341	1.00[EUR][1000 genomes]
rs73149352	1.00[EUR][1000 genomes]
rs73149361	1.00[EUR][1000 genomes]
rs73149486	1.00[EUR][1000 genomes]
rs73149488	1.00[EUR][1000 genomes]
rs73149492	1.00[EUR][1000 genomes]
rs73149498	1.00[EUR][1000 genomes]
rs73151191	1.00[EUR][1000 genomes]
rs73151194	1.00[EUR][1000 genomes]
rs73151225	1.00[EUR][1000 genomes]
rs73151238	1.00[EUR][1000 genomes]
rs73151244	1.00[EUR][1000 genomes]
rs73151246	1.00[EUR][1000 genomes]
rs73151250	1.00[EUR][1000 genomes]
rs73151703	1.00[EUR][1000 genomes]
rs73151726	1.00[EUR][1000 genomes]
rs73151734	1.00[EUR][1000 genomes]
rs73151743	1.00[EUR][1000 genomes]
rs73153111	1.00[EUR][1000 genomes]
rs73153114	1.00[EUR][1000 genomes]
rs73153120	1.00[EUR][1000 genomes]
rs73153125	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888552	chr7:80683308-80755310	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv888553	chr7:80683308-80766407	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv888554	chr7:80695828-80755310	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv888555	chr7:80695828-80766407	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80738400-80743400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr7:80739800-80741400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:80739800-80741400	Enhancers	HMEC	breast
4	chr7:80739800-80741400	Enhancers	HSMM	muscle
5	chr7:80739800-80741600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:80739800-80742400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:80739800-80742400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:80739800-80743200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:80740200-80741400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:80740200-80741400	Enhancers	Primary hematopoietic stem cells	blood
11	chr7:80740200-80741400	Enhancers	Fetal Lung	lung
12	chr7:80740200-80741400	Enhancers	NHDF-Ad	bronchial
13	chr7:80740200-80741600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr7:80740200-80741600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:80740200-80741800	Enhancers	NH-A	brain
16	chr7:80740200-80741800	Enhancers	Osteobl	bone
17	chr7:80740200-80742400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:80740200-80743600	Enhancers	Colon Smooth Muscle	Colon
19	chr7:80740400-80741200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:80740400-80741400	Enhancers	Rectal Smooth Muscle	rectum
21	chr7:80740800-80741200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:80740800-80741200	Enhancers	Stomach Smooth Muscle	stomach
23	chr7:80740800-80741400	Enhancers	HSMMtube	muscle
24	chr7:80740800-80741800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:80740800-80741800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:80740800-80742000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:80740800-80742600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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