Variant report

Variant	rs17154663
Chromosome Location	chr10:44434473-44434474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12570158	0.88[ASN][1000 genomes]
rs12572433	0.81[CHB][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12572701	0.88[ASN][1000 genomes]
rs1408941	0.93[ASN][1000 genomes]
rs1532232	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17154683	0.88[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948794	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4948795	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55738485	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58037492	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58297052	0.90[ASN][1000 genomes]
rs58635230	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs912801	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44422800-44437600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44434200-44434600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr10:44434200-44438400	Enhancers	Fetal Brain Male	brain
4	chr10:44434200-44438800	Enhancers	Fetal Muscle Leg	muscle
5	chr10:44434400-44434600	Enhancers	Pancreas	Pancrea
6	chr10:44434400-44434600	Enhancers	Right Atrium	heart
7	chr10:44434400-44434600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:44434400-44436400	Enhancers	GM12878-XiMat	blood
9	chr10:44434400-44438200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:44434400-44438600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:44434400-44438600	Enhancers	NHDF-Ad	bronchial
12	chr10:44434400-44441600	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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