Variant report

Variant	rs17155059
Chromosome Location	chr7:107787327-107787328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107786869..107789653-chr7:107796149..107799112,2	MCF-7	breast:
2	chr7:107787161..107789669-chr7:107803661..107805166,2	K562	blood:
3	chr7:107786162..107789896-chr7:107792784..107794752,3	K562	blood:
4	chr7:107754057..107755506-chr7:107786259..107787331,4	K562	blood:
5	chr7:107786172..107787859-chr7:108212708..108215561,2	MCF-7	breast:
6	chr7:107786448..107787431-chr7:107805067..107805869,2	K562	blood:

Variant related genes	Relation type
ENSG00000091129	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12111776	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12111953	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1269630	1.00[CHB][hapmap]
rs1269631	1.00[CHB][hapmap]
rs1269632	1.00[CHB][hapmap]
rs1269633	1.00[CHB][hapmap]
rs1269637	1.00[CHB][hapmap]
rs1269638	1.00[CHB][hapmap]
rs1269644	1.00[CHB][hapmap]
rs1269654	1.00[CHB][hapmap]
rs1269657	1.00[CHB][hapmap]
rs17134753	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155074	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17155081	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17155094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155125	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs17155133	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17333297	0.82[MEX][hapmap]
rs382751	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs394921	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs399849	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs401573	1.00[CHB][hapmap]
rs420889	1.00[CHB][hapmap]
rs449919	1.00[CHB][hapmap]
rs58496724	1.00[ASN][1000 genomes]
rs58537052	1.00[ASN][1000 genomes]
rs60995779	1.00[ASN][1000 genomes]
rs62469166	1.00[ASN][1000 genomes]
rs62469172	1.00[ASN][1000 genomes]
rs62469175	1.00[ASN][1000 genomes]
rs6466219	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6974903	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73412325	1.00[ASN][1000 genomes]
rs73412389	1.00[ASN][1000 genomes]
rs7456860	1.00[CHB][hapmap]
rs7783432	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107775800-107789000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:107779800-107789200	Weak transcription	HUVEC	blood vessel
3	chr7:107783000-107792600	Weak transcription	Pancreas	Pancrea
4	chr7:107784800-107789000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:107785600-107787400	Enhancers	Fetal Thymus	thymus
6	chr7:107785600-107787800	Enhancers	Fetal Muscle Leg	muscle
7	chr7:107786200-107787800	Enhancers	Fetal Intestine Small	intestine
8	chr7:107786400-107787800	Enhancers	Brain Germinal Matrix	brain
9	chr7:107786400-107787800	Enhancers	Duodenum Mucosa	Duodenum
10	chr7:107786400-107788000	Enhancers	Fetal Intestine Large	intestine
11	chr7:107786600-107787600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr7:107786600-107788000	Enhancers	Liver	Liver
13	chr7:107786600-107788400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:107786800-107787400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:107786800-107789200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:107786800-107789400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:107786800-107789400	Weak transcription	NHLF	lung
18	chr7:107786800-107789600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr7:107786800-107789600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:107786800-107789600	Weak transcription	Fetal Lung	lung
21	chr7:107786800-107789600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr7:107786800-107790400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:107786800-107790400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:107786800-107798000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:107786800-107805600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:107786800-107811800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr7:107786800-107818400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:107786800-107819000	Weak transcription	Brain Angular Gyrus	brain
29	chr7:107786800-107857800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:107787000-107787400	Weak transcription	Brain Anterior Caudate	brain
31	chr7:107787000-107787400	Weak transcription	Fetal Brain Female	brain
32	chr7:107787000-107787400	Weak transcription	Placenta	Placenta
33	chr7:107787000-107789400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr7:107787000-107793000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr7:107787000-107818800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr7:107787200-107787400	Genic enhancers	A549	lung

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