Variant report

Variant	rs7456860
Chromosome Location	chr7:107633956-107633957
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107622464..107625713-chr7:107633093..107636703,4	K562	blood:
2	chr7:107628348..107631842-chr7:107632054..107634227,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12111776	1.00[CHB][hapmap]
rs12111953	1.00[CHB][hapmap]
rs17134753	1.00[CHB][hapmap]
rs17155059	1.00[CHB][hapmap]
rs17155074	1.00[CHB][hapmap]
rs17155081	1.00[CHB][hapmap]
rs17155094	1.00[CHB][hapmap]
rs17155125	1.00[CHB][hapmap]
rs382751	1.00[CHB][hapmap]
rs394921	1.00[CHB][hapmap]
rs399849	1.00[CHB][hapmap]
rs401573	1.00[CHB][hapmap]
rs420889	1.00[CHB][hapmap]
rs449919	1.00[CHB][hapmap]
rs6466219	1.00[CHB][hapmap]
rs6943445	1.00[MEX][hapmap]
rs6974903	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831088	chr7:107497100-107693680	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107579400-107636200	Weak transcription	Fetal Brain Male	brain
2	chr7:107593400-107635600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:107600200-107635200	Weak transcription	Brain Anterior Caudate	brain
4	chr7:107608600-107634200	Weak transcription	Lung	lung
5	chr7:107614600-107635200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:107615200-107634200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:107615400-107635200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:107615400-107635400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:107616200-107635600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:107616400-107635000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:107616400-107635200	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:107616400-107641000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:107617000-107634200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:107617400-107634200	Weak transcription	Right Ventricle	heart
15	chr7:107617400-107634400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:107617800-107634200	Weak transcription	Spleen	Spleen
17	chr7:107618200-107634400	Weak transcription	Aorta	Aorta
18	chr7:107618200-107635600	Weak transcription	Esophagus	oesophagus
19	chr7:107618400-107634000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr7:107618400-107634000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:107618400-107635600	Weak transcription	Psoas Muscle	Psoas
22	chr7:107618600-107634000	Weak transcription	Colonic Mucosa	Colon
23	chr7:107618600-107636400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr7:107618800-107635200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr7:107619000-107635400	Weak transcription	K562	blood
26	chr7:107619000-107639400	Weak transcription	Fetal Brain Female	brain
27	chr7:107620000-107635200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:107621200-107636000	Weak transcription	Small Intestine	intestine
29	chr7:107621600-107634600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:107623200-107634000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:107623200-107634200	Strong transcription	HSMM	muscle
32	chr7:107623800-107634200	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr7:107623800-107634600	Strong transcription	A549	lung
34	chr7:107624000-107634000	Weak transcription	Stomach Mucosa	stomach
35	chr7:107624000-107634200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr7:107624000-107634200	Strong transcription	HepG2	liver
37	chr7:107624000-107635600	Weak transcription	Left Ventricle	heart
38	chr7:107624800-107634200	Strong transcription	Fetal Stomach	stomach
39	chr7:107625000-107634200	Strong transcription	Fetal Lung	lung
40	chr7:107625200-107635200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr7:107626800-107634200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:107627400-107634000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr7:107629600-107634000	Weak transcription	HSMMtube	muscle
44	chr7:107629600-107635600	Weak transcription	Right Atrium	heart
45	chr7:107629800-107634200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr7:107630600-107634200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:107631000-107634600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr7:107631400-107634000	Strong transcription	NH-A	brain
49	chr7:107631400-107634200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr7:107632400-107634000	Strong transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links