Variant report

Variant	rs17155421
Chromosome Location	chr7:107952864-107952865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12671060	0.82[AFR][1000 genomes]
rs17155400	0.82[JPT][hapmap]
rs2111202	0.90[LWK][hapmap]
rs4142284	0.83[LWK][hapmap]
rs62469218	0.94[ASN][1000 genomes]
rs7808724	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1030425	chr7:107910716-108041036	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1019059	chr7:107935905-107995523	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv1021783	chr7:107935905-107998281	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	esv2761354	chr7:107935905-107998293	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv1031824	chr7:107935905-108006038	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv1017288	chr7:107939739-108000837	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107940400-107964400	Weak transcription	Pancreas	Pancrea
2	chr7:107945400-107953800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:107945600-107954000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:107945800-107954000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:107945800-107956000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:107947000-107953800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr7:107947600-107953400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:107947600-107953800	Enhancers	HMEC	breast
9	chr7:107947600-107954000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:107947600-107955200	Enhancers	HUVEC	blood vessel
11	chr7:107947800-107953400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:107948000-107965200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:107948200-107953800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:107949600-107953800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:107949600-107953800	Enhancers	NHEK	skin
16	chr7:107949600-107955600	Weak transcription	Adipose Nuclei	Adipose
17	chr7:107950800-107962800	Weak transcription	Brain Anterior Caudate	brain
18	chr7:107951000-107953600	Weak transcription	Esophagus	oesophagus
19	chr7:107951400-107963000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:107951800-107953400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:107951800-107954600	Weak transcription	Brain Angular Gyrus	brain
22	chr7:107952000-107953200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:107952200-107953200	Weak transcription	Brain Substantia Nigra	brain
24	chr7:107952600-107953000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr7:107952600-107953000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:107952600-107953000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr7:107952600-107953600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr7:107952600-107953600	Weak transcription	NH-A	brain
29	chr7:107952600-107953800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:107952600-107953800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:107952600-107963000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr7:107952600-107963600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:107952600-107965200	Weak transcription	A549	lung

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