Variant report

Variant	rs17156240
Chromosome Location	chr7:28075585-28075586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:28066207..28069550-chr7:28075402..28078570,3	K562	blood:
2	chr7:28073836..28076003-chr7:28081587..28083353,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10486575	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1123858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17156137	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17156218	0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17156282	0.85[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57480840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57661426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59980843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28045400-28076200	Weak transcription	Gastric	stomach
2	chr7:28057800-28076200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:28058000-28076200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:28060000-28076000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:28060200-28076000	Weak transcription	HUVEC	blood vessel
6	chr7:28060600-28076600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:28060800-28075600	Weak transcription	HSMMtube	muscle
8	chr7:28061400-28076000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:28062000-28076400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:28063000-28076400	Enhancers	Colon Smooth Muscle	Colon
11	chr7:28064800-28076800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr7:28067600-28078600	Weak transcription	Fetal Stomach	stomach
13	chr7:28068800-28076600	Weak transcription	Fetal Heart	heart
14	chr7:28069000-28076000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr7:28069200-28075600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:28069600-28075600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:28071000-28078600	Enhancers	Rectal Smooth Muscle	rectum
18	chr7:28071600-28076000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr7:28071600-28080000	Weak transcription	Primary B cells from cord blood	blood
20	chr7:28072000-28079200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:28072400-28076200	Weak transcription	Right Atrium	heart
22	chr7:28072600-28075800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr7:28073200-28076000	Weak transcription	Left Ventricle	heart
24	chr7:28073200-28076000	Weak transcription	Stomach Mucosa	stomach
25	chr7:28073200-28076200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:28073200-28076200	Weak transcription	Lung	lung
27	chr7:28073200-28076200	Weak transcription	Right Ventricle	heart
28	chr7:28073200-28082600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr7:28073600-28076200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr7:28073600-28076200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:28073600-28076200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:28073800-28076000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr7:28073800-28076200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr7:28073800-28076400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:28073800-28077600	Enhancers	Liver	Liver
36	chr7:28074200-28075600	Enhancers	Ovary	ovary
37	chr7:28074200-28076200	Enhancers	Hela-S3	cervix
38	chr7:28074400-28075600	Weak transcription	NHDF-Ad	bronchial
39	chr7:28074400-28075600	Weak transcription	NHLF	lung
40	chr7:28074400-28075600	Weak transcription	Osteobl	bone
41	chr7:28074400-28075800	Weak transcription	NH-A	brain
42	chr7:28074400-28076200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr7:28074400-28076200	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr7:28074400-28076600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr7:28074400-28077200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr7:28074400-28085800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr7:28074600-28075800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:28074600-28076200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:28074600-28078600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr7:28074600-28078800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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